Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
SHMT1P34896 RNA5SP139-201ENST00000364340 117 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 RNU6-384P-201ENST00000364900 104 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 Y_RNA.324-201ENST00000365165 102 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 Y_RNA.373-201ENST00000365600 103 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 Z98749.2-208ENST00000381646 500 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
SHMT1P34896 MIR10A-201ENST00000385043 110 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 EIF4E2P1-201ENST00000393781 255 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 RAP1BP3-201ENST00000407180 549 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.92□□□□□ -1.94
SHMT1P34896 HMGN2P10-201ENST00000448085 265 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 TRBV12-1-201ENST00000479785 344 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 AC018710.1-201ENST00000506509 158 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 AC098799.2-201ENST00000509466 868 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 SNORA14.1-201ENST00000516113 141 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 Y_RNA.665-201ENST00000516177 98 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 RNA5SP24-201ENST00000516478 95 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 AC069113.1-201ENST00000517763 267 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 AC018638.8-201ENST00000588755 281 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 AC009033.1-201ENST00000624279 431 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 AC064859.1-201ENST00000624741 174 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 MIR3199-2-201ENST00000636243 86 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 AC091564.4-201ENST00000533934 2194 ntBASIC2.92□□□□□ -1.94
SHMT1P34896 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
SHMT1P34896 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
SHMT1P34896 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
SHMT1P34896 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
SHMT1P34896 RNU1-105P-201ENST00000363470 161 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 RNA5SP456-201ENST00000364002 114 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 RNU6-1303P-201ENST00000364841 107 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 CD24P4-201ENST00000382840 243 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 MT-TL1-201ENST00000386347 75 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 RNU6-876P-201ENST00000391295 104 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 RPL21P75-201ENST00000396599 483 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 RPL21P28-201ENST00000401418 483 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 AL162578.1-201ENST00000406202 378 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 RN7SKP284-201ENST00000411002 343 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.91□□□□□ -1.94
SHMT1P34896 AL365496.1-201ENST00000426885 215 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.91□□□□□ -1.94
SHMT1P34896 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.91□□□□□ -1.94
SHMT1P34896 BTF3P15-201ENST00000455606 336 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 RPL21P39-201ENST00000463605 483 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.91□□□□□ -1.94
SHMT1P34896 AP000852.1-201ENST00000472460 573 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 AC087190.1-201ENST00000484462 480 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 AC093591.1-201ENST00000491435 481 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 RPL21P16-201ENST00000495531 483 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 RNU6-56P-201ENST00000516986 93 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 SNORA25.17-201ENST00000517184 124 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 AC022634.1-201ENST00000520765 532 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 AC118273.2-201ENST00000532092 465 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.91□□□□□ -1.94
SHMT1P34896 AC021739.1-201ENST00000559631 174 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
SHMT1P34896 NUTF2P8-201ENST00000604593 363 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 AC069234.5-201ENST00000611056 416 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.91□□□□□ -1.94
SHMT1P34896 MIR6134-201ENST00000617606 109 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 DUXAP9-208ENST00000622815 614 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
SHMT1P34896 AC093536.2-201ENST00000565257 1406 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 ADAM3A-203ENST00000461344 2157 ntBASIC2.91□□□□□ -1.94
SHMT1P34896 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.9□□□□□ -1.94
SHMT1P34896 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.9□□□□□ -1.94
SHMT1P34896 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.9□□□□□ -1.94
SHMT1P34896 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.94
SHMT1P34896 AL161431.1-201ENST00000618966 4205 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
SHMT1P34896 Y_RNA.72-201ENST00000362894 103 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 Y_RNA.86-201ENST00000363020 111 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 Y_RNA.167-201ENST00000363735 109 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 RNU6-266P-201ENST00000364225 107 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 Y_RNA.530-201ENST00000384587 101 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 AL356776.1-201ENST00000406574 447 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 SNORD88.1-201ENST00000408684 91 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 RPS15AP5-201ENST00000436276 388 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 RPL23AP45-201ENST00000476406 468 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 AC083904.1-201ENST00000487828 231 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 RN7SL636P-201ENST00000497504 294 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.9□□□□□ -1.95
SHMT1P34896 AC113155.1-201ENST00000511141 769 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.9□□□□□ -1.95
SHMT1P34896 AC023050.3-201ENST00000541142 333 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.9□□□□□ -1.95
SHMT1P34896 PSMA3P-201ENST00000555485 635 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.9□□□□□ -1.95
SHMT1P34896 BNIP3P25-201ENST00000596023 559 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 AC002044.1-201ENST00000606707 158 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 AC090617.10-201ENST00000624308 134 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
SHMT1P34896 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.9□□□□□ -1.95
SHMT1P34896 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.9□□□□□ -1.95
SHMT1P34896 AC008669.1-201ENST00000565823 2178 ntBASIC2.9□□□□□ -1.95
SHMT1P34896 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 127.8 ms