Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD9P28356 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD9P28356 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXD9P28356 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD9P28356 AC011005.2-201ENST00000487324 359 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 RPL30P5-201ENST00000494923 336 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD9P28356 SNORA31.1-201ENST00000515993 133 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 RNU1-86P-201ENST00000516108 154 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 SNORA31.5-201ENST00000516190 133 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 MIR892C-201ENST00000516410 77 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 RNU6-1256P-201ENST00000516539 103 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 RNU1-107P-201ENST00000516617 154 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 RNU6-307P-201ENST00000516743 106 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.14□□□□□ -1.91
HOXD9P28356 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD9P28356 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD9P28356 AC022080.3-201ENST00000544433 482 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXD9P28356 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD9P28356 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD9P28356 AC093732.2-201ENST00000607950 274 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 7SK.10-201ENST00000621414 298 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD9P28356 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXD9P28356 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD9P28356 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
HOXD9P28356 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.14□□□□□ -1.91
HOXD9P28356 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.13□□□□□ -1.91
HOXD9P28356 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
HOXD9P28356 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD9P28356 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
HOXD9P28356 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXD9P28356 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXD9P28356 Y_RNA.80-201ENST00000362996 102 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 RNU1-115P-201ENST00000365329 160 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 Y_RNA.496-201ENST00000384444 101 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 RNU6-306P-201ENST00000384617 107 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD9P28356 AC243428.1-201ENST00000421099 264 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 AC008267.5-201ENST00000424928 265 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 ARF4P2-201ENST00000430209 526 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 MYL8P-204ENST00000431574 518 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 AL160004.2-201ENST00000432935 350 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 IPO7P1-201ENST00000442031 636 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD9P28356 NDUFB1P2-201ENST00000449477 176 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD9P28356 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXD9P28356 AL160314.1-201ENST00000490836 438 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 AC006445.2-201ENST00000510061 472 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 RNA5SP384-201ENST00000516615 116 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 RNU6-699P-201ENST00000517081 110 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD9P28356 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD9P28356 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXD9P28356 H3F3AP1-201ENST00000559984 334 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXD9P28356 OR1M4P-201ENST00000589199 287 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 AC007485.1-201ENST00000616755 206 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXD9P28356 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD9P28356 AL355596.1-201ENST00000565399 3996 ntBASIC3.13□□□□□ -1.91
HOXD9P28356 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD9P28356 RNA5SP383-201ENST00000362934 120 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 Y_RNA.151-201ENST00000363566 112 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 RNU6-331P-201ENST00000384724 107 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 MIR517A-201ENST00000385001 87 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 RNU6-1106P-201ENST00000390845 107 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 RNU1-101P-201ENST00000391171 127 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 MIR548F4-201ENST00000408515 105 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 AL096701.2-201ENST00000416920 238 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXD9P28356 RPL23AP22-201ENST00000437556 453 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 FTH1P25-201ENST00000447665 469 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 AC117440.1-201ENST00000474107 571 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 AL049830.2-201ENST00000480072 201 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 AC116655.1-201ENST00000508324 901 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 SCARNA16.2-201ENST00000516520 172 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 SNORD59.2-201ENST00000516873 68 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD9P28356 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXD9P28356 BNIP3P16-201ENST00000589779 534 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 HSPE1P7-201ENST00000604681 321 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 AL137843.1-201ENST00000605078 385 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 AL138880.2-201ENST00000616214 239 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 AL132822.1-201ENST00000617063 513 ntBASIC3.12□□□□□ -1.91
HOXD9P28356 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
HOXD9P28356 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXD9P28356 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXD9P28356 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXD9P28356 MIR412-201ENST00000362142 91 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 Y_RNA.2-201ENST00000362330 96 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 RNU6-1309P-201ENST00000363305 108 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 RNU6-1059P-201ENST00000363752 98 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 Y_RNA.364-201ENST00000365532 101 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 SNORD73A-201ENST00000386062 65 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 AL445529.1-201ENST00000398713 389 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 RNU6-174P-201ENST00000410406 106 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 RNU6-1025P-201ENST00000410629 104 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms