Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.58□□□□□ -2.16
USF1P22415 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
USF1P22415 RNU6-39P-201ENST00000384344 107 ntBASIC1.58□□□□□ -2.16
USF1P22415 SNORD116-20-201ENST00000384529 92 ntBASIC1.58□□□□□ -2.16
USF1P22415 RNU6-1179P-201ENST00000384667 107 ntBASIC1.58□□□□□ -2.16
USF1P22415 Y_RNA.595-201ENST00000410403 105 ntBASIC1.58□□□□□ -2.16
USF1P22415 RNU2-23P-201ENST00000410545 195 ntBASIC1.58□□□□□ -2.16
USF1P22415 RNU2-39P-201ENST00000410604 198 ntBASIC1.58□□□□□ -2.16
USF1P22415 SNORD56-201ENST00000413522 71 ntBASIC1.58□□□□□ -2.16
USF1P22415 AC007283.2-201ENST00000424739 197 ntBASIC1.58□□□□□ -2.16
USF1P22415 AL589872.1-201ENST00000426602 288 ntBASIC1.58□□□□□ -2.16
USF1P22415 MED13P1-201ENST00000428342 171 ntBASIC1.58□□□□□ -2.16
USF1P22415 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.58□□□□□ -2.16
USF1P22415 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.58□□□□□ -2.16
USF1P22415 AL121594.1-201ENST00000475906 575 ntBASIC1.58□□□□□ -2.16
USF1P22415 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.58□□□□□ -2.16
USF1P22415 AC117522.1-201ENST00000509821 380 ntBASIC1.58□□□□□ -2.16
USF1P22415 MRPS36P3-201ENST00000519284 130 ntBASIC1.58□□□□□ -2.16
USF1P22415 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.58□□□□□ -2.16
USF1P22415 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.58□□□□□ -2.16
USF1P22415 AP000763.2-201ENST00000540641 163 ntBASIC1.58□□□□□ -2.16
USF1P22415 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
USF1P22415 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.58□□□□□ -2.16
USF1P22415 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.58□□□□□ -2.16
USF1P22415 AC243960.4-201ENST00000600532 288 ntBASIC1.58□□□□□ -2.16
USF1P22415 AL773524.1-201ENST00000614065 229 ntBASIC1.58□□□□□ -2.16
USF1P22415 AC005296.1-201ENST00000616145 209 ntBASIC1.58□□□□□ -2.16
USF1P22415 MIR7844-201ENST00000616161 122 ntBASIC1.58□□□□□ -2.16
USF1P22415 AC108479.2-201ENST00000617314 601 ntBASIC1.58□□□□□ -2.16
USF1P22415 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.58□□□□□ -2.16
USF1P22415 AC090517.3-201ENST00000625170 141 ntBASIC1.58□□□□□ -2.16
USF1P22415 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
USF1P22415 AC009487.4-201ENST00000624969 3585 ntBASIC1.58□□□□□ -2.16
USF1P22415 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC1.58□□□□□ -2.16
USF1P22415 FARSBP1-201ENST00000435808 1778 ntBASIC1.57□□□□□ -2.16
USF1P22415 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
USF1P22415 RNU6-1210P-201ENST00000363775 107 ntBASIC1.57□□□□□ -2.16
USF1P22415 RNU6-234P-201ENST00000365229 104 ntBASIC1.57□□□□□ -2.16
USF1P22415 MIR558-201ENST00000384920 94 ntBASIC1.57□□□□□ -2.16
USF1P22415 MIR29C-201ENST00000385231 88 ntBASIC1.57□□□□□ -2.16
USF1P22415 CBX3P9-201ENST00000402326 552 ntBASIC1.57□□□□□ -2.16
USF1P22415 MTCYBP36-201ENST00000404146 440 ntBASIC1.57□□□□□ -2.16
USF1P22415 RNU2-48P-201ENST00000410694 191 ntBASIC1.57□□□□□ -2.16
USF1P22415 AC074117.2-201ENST00000417130 397 ntBASIC1.57□□□□□ -2.16
USF1P22415 ELOCP4-201ENST00000420090 333 ntBASIC1.57□□□□□ -2.16
USF1P22415 RPL23AP6-201ENST00000446637 472 ntBASIC1.57□□□□□ -2.16
USF1P22415 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC1.57□□□□□ -2.16
USF1P22415 RN7SKP210-201ENST00000459176 261 ntBASIC1.57□□□□□ -2.16
USF1P22415 snoU109.1-201ENST00000459339 135 ntBASIC1.57□□□□□ -2.16
USF1P22415 snoU13.14-201ENST00000459372 104 ntBASIC1.57□□□□□ -2.16
USF1P22415 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.57□□□□□ -2.16
USF1P22415 Y_RNA.687-201ENST00000516558 91 ntBASIC1.57□□□□□ -2.16
USF1P22415 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.57□□□□□ -2.16
USF1P22415 CYCSP27-201ENST00000527643 293 ntBASIC1.57□□□□□ -2.16
USF1P22415 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.57□□□□□ -2.16
USF1P22415 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.57□□□□□ -2.16
USF1P22415 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC1.57□□□□□ -2.16
USF1P22415 MIR3122-201ENST00000577243 73 ntBASIC1.57□□□□□ -2.16
USF1P22415 MIR3908-201ENST00000579798 126 ntBASIC1.57□□□□□ -2.16
USF1P22415 AL670379.2-201ENST00000604983 252 ntBASIC1.57□□□□□ -2.16
USF1P22415 AL670379.4-201ENST00000605279 254 ntBASIC1.57□□□□□ -2.16
USF1P22415 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC1.57□□□□□ -2.16
USF1P22415 AC027807.2-201ENST00000616099 408 ntBASIC1.57□□□□□ -2.16
USF1P22415 AL359314.1-201ENST00000616913 261 ntBASIC1.57□□□□□ -2.16
USF1P22415 AC093648.1-201ENST00000623546 606 ntBASIC1.57□□□□□ -2.16
USF1P22415 AC068787.1-201ENST00000623908 691 ntBASIC1.57□□□□□ -2.16
USF1P22415 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.57□□□□□ -2.16
USF1P22415 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.56□□□□□ -2.16
USF1P22415 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
USF1P22415 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
USF1P22415 Y_RNA.238-201ENST00000364441 102 ntBASIC1.56□□□□□ -2.16
USF1P22415 RNA5SP190-201ENST00000365222 118 ntBASIC1.56□□□□□ -2.16
USF1P22415 RNU6-546P-201ENST00000383991 107 ntBASIC1.56□□□□□ -2.16
USF1P22415 RNU6-611P-201ENST00000384276 104 ntBASIC1.56□□□□□ -2.16
USF1P22415 SNORA24.1-201ENST00000384401 135 ntBASIC1.56□□□□□ -2.16
USF1P22415 RNU6-1274P-201ENST00000384557 107 ntBASIC1.56□□□□□ -2.16
USF1P22415 MIR578-201ENST00000384828 96 ntBASIC1.56□□□□□ -2.16
USF1P22415 RNU2-20P-201ENST00000410425 191 ntBASIC1.56□□□□□ -2.16
USF1P22415 RNU2-32P-201ENST00000411193 191 ntBASIC1.56□□□□□ -2.16
USF1P22415 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.56□□□□□ -2.16
USF1P22415 AL031779.1-201ENST00000415663 330 ntBASIC1.56□□□□□ -2.16
USF1P22415 AC108667.1-201ENST00000428618 249 ntBASIC1.56□□□□□ -2.16
USF1P22415 RNU6-1053P-201ENST00000515930 101 ntBASIC1.56□□□□□ -2.16
USF1P22415 SNORA43.2-201ENST00000516652 128 ntBASIC1.56□□□□□ -2.16
USF1P22415 RN7SKP256-201ENST00000517201 314 ntBASIC1.56□□□□□ -2.16
USF1P22415 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC1.56□□□□□ -2.16
USF1P22415 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.56□□□□□ -2.16
USF1P22415 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.56□□□□□ -2.16
USF1P22415 OR5AL2P-201ENST00000532185 920 ntBASIC1.56□□□□□ -2.16
USF1P22415 GNAI2P1-201ENST00000541815 315 ntBASIC1.56□□□□□ -2.16
USF1P22415 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.56□□□□□ -2.16
USF1P22415 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC1.56□□□□□ -2.16
USF1P22415 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC1.56□□□□□ -2.16
USF1P22415 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.56□□□□□ -2.16
USF1P22415 MIR4498-201ENST00000577599 66 ntBASIC1.56□□□□□ -2.16
USF1P22415 AC023043.2-201ENST00000589678 1026 ntBASIC1.56□□□□□ -2.16
USF1P22415 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.56□□□□□ -2.16
USF1P22415 SNRPGP19-201ENST00000603826 189 ntBASIC1.56□□□□□ -2.16
USF1P22415 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC1.56□□□□□ -2.16
USF1P22415 AC084768.2-201ENST00000622736 221 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 139 ms