Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 UBL5P3-201ENST00000475112 231 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 RPS15AP34-201ENST00000487776 387 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 AC091885.1-201ENST00000506658 268 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.38□□□□□ -2.03
HOXD4P09016 RNA5SP24-201ENST00000516478 95 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 RNU6-143P-201ENST00000516942 93 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXD4P09016 CENPUP1-201ENST00000526649 1202 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXD4P09016 AL391261.3-201ENST00000557194 520 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 AL157871.3-201ENST00000557231 293 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
HOXD4P09016 SNORD53-201ENST00000579969 78 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 MIR548AC-201ENST00000585049 88 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 DUSP12P1-201ENST00000612874 516 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 AC064859.1-201ENST00000624741 174 ntBASIC2.38□□□□□ -2.03
HOXD4P09016 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.38□□□□□ -2.03
HOXD4P09016 RNU6-371P-201ENST00000364283 108 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 Y_RNA.279-201ENST00000364763 95 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 RNU6-393P-201ENST00000384475 107 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 RNU2-25P-201ENST00000411041 191 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 RPL21P90-201ENST00000415692 466 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 RPLP0P7-201ENST00000416050 667 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 RPL21P111-201ENST00000418453 477 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC098614.2-201ENST00000426040 255 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC112220.1-201ENST00000434628 355 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 SNRPEP9-201ENST00000436794 238 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXD4P09016 MTND3P10-201ENST00000450967 341 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.37□□□□□ -2.03
HOXD4P09016 RPL12P25-201ENST00000455592 494 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 RNU6-1208P-201ENST00000459588 107 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC003982.1-202ENST00000469928 248 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC022493.1-201ENST00000492984 337 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC139453.3-201ENST00000493276 369 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC114786.4-201ENST00000508771 728 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC107222.1-201ENST00000510899 637 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXD4P09016 AC112206.3-201ENST00000514578 389 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 RNU2-69P-201ENST00000516061 100 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 RPPH1-2P-201ENST00000516688 293 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 RPL7P20-201ENST00000520308 745 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXD4P09016 MIR5194-201ENST00000582634 120 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC005730.3-201ENST00000583067 366 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC018638.8-201ENST00000588755 281 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC005498.1-201ENST00000592125 465 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC073539.2-201ENST00000597113 165 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC092807.2-201ENST00000609367 243 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 FTX_3.1-201ENST00000610451 147 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AC092794.2-201ENST00000620933 563 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 AL136221.1-201ENST00000621449 509 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 CTSLP2-204ENST00000629029 392 ntBASIC2.37□□□□□ -2.03
HOXD4P09016 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXD4P09016 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.36□□□□□ -2.03
HOXD4P09016 Y_RNA.33-201ENST00000362591 102 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 SNORD3E-201ENST00000362899 217 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 RNU6-1303P-201ENST00000364841 107 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 RNU1-100P-201ENST00000365255 165 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 RNU6-45P-201ENST00000384471 107 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 MIR888-201ENST00000401186 77 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 RPS4XP7-201ENST00000406274 780 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 RNU4-26P-201ENST00000410270 107 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 RNU6-1025P-201ENST00000410629 104 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 AL358075.3-201ENST00000426289 226 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXD4P09016 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.36□□□□□ -2.03
HOXD4P09016 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXD4P09016 AC010095.1-201ENST00000443543 144 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 DYNLL1P5-201ENST00000467158 270 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 Y_RNA.654-201ENST00000497848 106 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.36□□□□□ -2.03
HOXD4P09016 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.36□□□□□ -2.03
HOXD4P09016 AC113155.1-201ENST00000511141 769 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 LRRC34P2-201ENST00000514850 553 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 AC009902.1-201ENST00000519351 183 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 AC022634.1-201ENST00000520765 532 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.36□□□□□ -2.03
HOXD4P09016 OR11H5P-201ENST00000554039 926 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 AC009163.5-201ENST00000575421 637 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 MIR1273C-201ENST00000578669 77 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXD4P09016 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.36□□□□□ -2.03
HOXD4P09016 BNIP3P25-201ENST00000596023 559 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.36□□□□□ -2.03
HOXD4P09016 AC092747.3-201ENST00000603769 301 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 U6.42-201ENST00000618440 107 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.36□□□□□ -2.03
HOXD4P09016 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
HOXD4P09016 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.36□□□□□ -2.03
HOXD4P09016 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXD4P09016 MAPK10-266ENST00000641066 6555 ntBASIC2.36□□□□□ -2.03
HOXD4P09016 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.35□□□□□ -2.03
HOXD4P09016 AC026241.1-201ENST00000517873 2142 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 Y_RNA.72-201ENST00000362894 103 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 RNU6-82P-201ENST00000363970 107 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 RNU6-867P-201ENST00000364956 107 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 RNU6-395P-201ENST00000365662 106 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms