Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.59□□□□□ -1.99
CLPTM1O96005 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.59□□□□□ -1.99
CLPTM1O96005 AC103851.1-201ENST00000506833 274 ntBASIC2.59□□□□□ -1.99
CLPTM1O96005 RNA5SP367-201ENST00000516557 118 ntBASIC2.59□□□□□ -1.99
CLPTM1O96005 RNU7-30P-201ENST00000516835 62 ntBASIC2.59□□□□□ -1.99
CLPTM1O96005 SNORA25.17-201ENST00000517184 124 ntBASIC2.59□□□□□ -1.99
CLPTM1O96005 RNU1-104P-201ENST00000517280 175 ntBASIC2.59□□□□□ -1.99
CLPTM1O96005 AC022080.3-201ENST00000544433 482 ntBASIC2.59□□□□□ -1.99
CLPTM1O96005 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.59□□□□□ -1.99
CLPTM1O96005 MIR5692C1-201ENST00000585309 91 ntBASIC2.59□□□□□ -1.99
CLPTM1O96005 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.59□□□□□ -1.99
CLPTM1O96005 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.59□□□□□ -1.99
CLPTM1O96005 AL133216.2-202ENST00000634512 349 ntBASIC2.59□□□□□ -1.99
CLPTM1O96005 U2.21-201ENST00000637295 81 ntBASIC2.59□□□□□ -1.99
CLPTM1O96005 U6.99-201ENST00000637524 83 ntBASIC2.59□□□□□ -1.99
CLPTM1O96005 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.59□□□□□ -1.99
CLPTM1O96005 AC092593.1-201ENST00000515413 1815 ntBASIC2.58□□□□□ -2
CLPTM1O96005 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
CLPTM1O96005 MIR412-201ENST00000362142 91 ntBASIC2.58□□□□□ -2
CLPTM1O96005 MIR26A1-201ENST00000362205 77 ntBASIC2.58□□□□□ -2
CLPTM1O96005 Y_RNA.142-201ENST00000363491 102 ntBASIC2.58□□□□□ -2
CLPTM1O96005 SNORD113-7-201ENST00000363762 77 ntBASIC2.58□□□□□ -2
CLPTM1O96005 RNU6-166P-201ENST00000384371 107 ntBASIC2.58□□□□□ -2
CLPTM1O96005 MIR10A-201ENST00000385043 110 ntBASIC2.58□□□□□ -2
CLPTM1O96005 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.58□□□□□ -2
CLPTM1O96005 RNU6-510P-201ENST00000391239 108 ntBASIC2.58□□□□□ -2
CLPTM1O96005 Y_RNA.623-201ENST00000411128 95 ntBASIC2.58□□□□□ -2
CLPTM1O96005 PGBD4P6-201ENST00000421501 610 ntBASIC2.58□□□□□ -2
CLPTM1O96005 AL353729.1-201ENST00000425044 720 ntBASIC2.58□□□□□ -2
CLPTM1O96005 NDUFA5P4-201ENST00000436704 385 ntBASIC2.58□□□□□ -2
CLPTM1O96005 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.58□□□□□ -2
CLPTM1O96005 AL078601.1-201ENST00000444542 271 ntBASIC2.58□□□□□ -2
CLPTM1O96005 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.58□□□□□ -2
CLPTM1O96005 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.58□□□□□ -2
CLPTM1O96005 PPP1R2P5-201ENST00000457256 603 ntBASIC2.58□□□□□ -2
CLPTM1O96005 AC117440.1-201ENST00000474107 571 ntBASIC2.58□□□□□ -2
CLPTM1O96005 AC011005.2-201ENST00000487324 359 ntBASIC2.58□□□□□ -2
CLPTM1O96005 HMGB1P30-201ENST00000492455 606 ntBASIC2.58□□□□□ -2
CLPTM1O96005 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.58□□□□□ -2
CLPTM1O96005 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.58□□□□□ -2
CLPTM1O96005 AC008549.1-201ENST00000512900 643 ntBASIC2.58□□□□□ -2
CLPTM1O96005 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.58□□□□□ -2
CLPTM1O96005 MIR892C-201ENST00000516410 77 ntBASIC2.58□□□□□ -2
CLPTM1O96005 RNU6-1069P-201ENST00000516612 133 ntBASIC2.58□□□□□ -2
CLPTM1O96005 RN7SKP256-201ENST00000517201 314 ntBASIC2.58□□□□□ -2
CLPTM1O96005 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.58□□□□□ -2
CLPTM1O96005 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.58□□□□□ -2
CLPTM1O96005 AC123912.5-201ENST00000605470 343 ntBASIC2.58□□□□□ -2
CLPTM1O96005 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.58□□□□□ -2
CLPTM1O96005 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.57□□□□□ -2
CLPTM1O96005 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
CLPTM1O96005 RNU6-778P-201ENST00000363269 103 ntBASIC2.57□□□□□ -2
CLPTM1O96005 Y_RNA.166-201ENST00000363730 102 ntBASIC2.57□□□□□ -2
CLPTM1O96005 RNU1-73P-201ENST00000383971 164 ntBASIC2.57□□□□□ -2
CLPTM1O96005 RNA5SP354-201ENST00000391247 136 ntBASIC2.57□□□□□ -2
CLPTM1O96005 AL122016.1-201ENST00000403365 367 ntBASIC2.57□□□□□ -2
CLPTM1O96005 RN7SKP32-201ENST00000410167 303 ntBASIC2.57□□□□□ -2
CLPTM1O96005 Z92545.1-201ENST00000411782 234 ntBASIC2.57□□□□□ -2
CLPTM1O96005 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.57□□□□□ -2
CLPTM1O96005 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.57□□□□□ -2
CLPTM1O96005 BRK1P2-201ENST00000442875 223 ntBASIC2.57□□□□□ -2
CLPTM1O96005 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.57□□□□□ -2
CLPTM1O96005 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.57□□□□□ -2
CLPTM1O96005 RNU6-864P-201ENST00000516256 108 ntBASIC2.57□□□□□ -2
CLPTM1O96005 RNU6-1088P-201ENST00000516850 104 ntBASIC2.57□□□□□ -2
CLPTM1O96005 RNU6-1183P-201ENST00000517054 60 ntBASIC2.57□□□□□ -2
CLPTM1O96005 RNU6-323P-201ENST00000521915 107 ntBASIC2.57□□□□□ -2
CLPTM1O96005 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.57□□□□□ -2
CLPTM1O96005 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.57□□□□□ -2
CLPTM1O96005 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.57□□□□□ -2
CLPTM1O96005 AL391261.3-201ENST00000557194 520 ntBASIC2.57□□□□□ -2
CLPTM1O96005 MIR3941-201ENST00000582572 103 ntBASIC2.57□□□□□ -2
CLPTM1O96005 AL451007.1-201ENST00000595491 289 ntBASIC2.57□□□□□ -2
CLPTM1O96005 AC024153.1-201ENST00000603103 365 ntBASIC2.57□□□□□ -2
CLPTM1O96005 RMST_4.1-201ENST00000616886 107 ntBASIC2.57□□□□□ -2
CLPTM1O96005 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.57□□□□□ -2
CLPTM1O96005 AC104985.2-201ENST00000620598 500 ntBASIC2.57□□□□□ -2
CLPTM1O96005 RMST_7.1-201ENST00000621935 268 ntBASIC2.57□□□□□ -2
CLPTM1O96005 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.57□□□□□ -2
CLPTM1O96005 RNU6-254P-201ENST00000363377 107 ntBASIC2.56□□□□□ -2
CLPTM1O96005 RNU1-105P-201ENST00000363470 161 ntBASIC2.56□□□□□ -2
CLPTM1O96005 SNORA67.1-201ENST00000364749 141 ntBASIC2.56□□□□□ -2
CLPTM1O96005 Y_RNA.324-201ENST00000365165 102 ntBASIC2.56□□□□□ -2
CLPTM1O96005 Y_RNA.356-201ENST00000365475 113 ntBASIC2.56□□□□□ -2
CLPTM1O96005 Z98749.2-208ENST00000381646 500 ntBASIC2.56□□□□□ -2
CLPTM1O96005 Y_RNA.480-201ENST00000384364 102 ntBASIC2.56□□□□□ -2
CLPTM1O96005 MIR450B-201ENST00000401182 78 ntBASIC2.56□□□□□ -2
CLPTM1O96005 MIR888-201ENST00000401186 77 ntBASIC2.56□□□□□ -2
CLPTM1O96005 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.56□□□□□ -2
CLPTM1O96005 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.56□□□□□ -2
CLPTM1O96005 HMGB1P9-201ENST00000429856 646 ntBASIC2.56□□□□□ -2
CLPTM1O96005 AL627311.1-201ENST00000431514 115 ntBASIC2.56□□□□□ -2
CLPTM1O96005 AL365400.1-201ENST00000431854 640 ntBASIC2.56□□□□□ -2
CLPTM1O96005 AL513043.1-201ENST00000439124 535 ntBASIC2.56□□□□□ -2
CLPTM1O96005 RPL26P9-201ENST00000457466 433 ntBASIC2.56□□□□□ -2
CLPTM1O96005 MTND4P17-201ENST00000470444 350 ntBASIC2.56□□□□□ -2
CLPTM1O96005 RPS27AP10-201ENST00000496103 208 ntBASIC2.56□□□□□ -2
CLPTM1O96005 TRBVA-201ENST00000498804 316 ntBASIC2.56□□□□□ -2
CLPTM1O96005 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.56□□□□□ -2
CLPTM1O96005 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms