Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
SHANK1Q9Y566 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.56□□□□□ -2.16
SHANK1Q9Y566 RNU6-884P-201ENST00000363889 107 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 RNY1P14-201ENST00000384426 108 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 RNU6-606P-201ENST00000384721 111 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 MIR454-201ENST00000390180 115 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 RNU6-817P-201ENST00000391083 104 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AL365338.1-201ENST00000422282 858 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AC007283.2-201ENST00000424739 197 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 MED13P1-201ENST00000428342 171 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AC133104.1-201ENST00000429100 218 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AL645568.3-201ENST00000433683 316 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.56□□□□□ -2.16
SHANK1Q9Y566 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SHANK1Q9Y566 RNU7-23P-201ENST00000459465 62 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 RAP1BP2-201ENST00000478270 544 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AC079382.1-201ENST00000493346 557 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 RPS27AP10-201ENST00000496103 208 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AF131216.2-201ENST00000512316 564 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.56□□□□□ -2.16
SHANK1Q9Y566 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.56□□□□□ -2.16
SHANK1Q9Y566 MIR1273C-201ENST00000578669 77 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AC090897.2-201ENST00000581715 130 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AC008498.1-201ENST00000613012 531 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 MIR6895-201ENST00000613497 78 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AC138649.3-201ENST00000622154 254 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 SCARNA4-202ENST00000625402 129 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 MIR7157-201ENST00000635801 60 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SHANK1Q9Y566 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SHANK1Q9Y566 CR848007.1-201ENST00000442354 1699 ntBASIC1.56□□□□□ -2.16
SHANK1Q9Y566 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 SNORA23-201ENST00000365128 182 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 RNU6-140P-201ENST00000384566 108 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 MIR1-2-201ENST00000384961 85 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 MIR1302-8-201ENST00000408342 128 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AC004965.1-201ENST00000413033 213 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AC096649.2-201ENST00000416186 393 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 ISCA1P1-201ENST00000426679 387 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AL353706.1-201ENST00000436728 494 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 MTCO2P16-201ENST00000436962 677 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 MTCO1P19-201ENST00000443487 500 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AL122001.1-201ENST00000457027 370 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 HSPE1P20-201ENST00000538133 289 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AL359212.1-201ENST00000556608 614 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 SEPT7P9-203ENST00000604116 343 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AC013553.2-201ENST00000604244 589 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AC099842.1-201ENST00000619919 596 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 Y_RNA.1-201ENST00000352915 104 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 Y_RNA.112-201ENST00000363250 102 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 Y_RNA.205-201ENST00000364128 113 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 RNU6-1035P-201ENST00000384477 107 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 CDK8P2-201ENST00000415020 547 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AC104651.1-201ENST00000427559 735 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AC244505.5-201ENST00000443639 207 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 SSXP4-201ENST00000451349 245 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 SEM1P1-201ENST00000506694 209 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 MIR892C-201ENST00000516410 77 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AP002453.2-201ENST00000533503 320 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 MTCO3P24-201ENST00000572729 782 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC1.55□□□□□ -2.16
SHANK1Q9Y566 MTND4LP5-201ENST00000605152 292 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 MIR15A-201ENST00000607334 83 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AL161734.1-201ENST00000609720 557 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 AC015540.1-201ENST00000615828 501 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 Z82195.2-201ENST00000612348 18351 ntBASIC1.55□□□□□ -2.16
SHANK1Q9Y566 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
SHANK1Q9Y566 Y_RNA.36-201ENST00000362602 112 ntBASIC1.54□□□□□ -2.16
SHANK1Q9Y566 CD24P4-201ENST00000382840 243 ntBASIC1.54□□□□□ -2.16
SHANK1Q9Y566 AL590002.1-201ENST00000406554 418 ntBASIC1.54□□□□□ -2.16
SHANK1Q9Y566 RPL7P37-201ENST00000425095 738 ntBASIC1.54□□□□□ -2.16
SHANK1Q9Y566 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC1.54□□□□□ -2.16
SHANK1Q9Y566 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 176.8 ms