Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AL158211.1-201ENST00000566763 763 ntBASIC2□□□□□ -2.09
TM9SF3Q9HD45 MIR3935-201ENST00000583472 104 ntBASIC2□□□□□ -2.09
TM9SF3Q9HD45 RPL30P11-203ENST00000598995 310 ntBASIC2□□□□□ -2.09
TM9SF3Q9HD45 AC112191.3-201ENST00000604371 277 ntBASIC2□□□□□ -2.09
TM9SF3Q9HD45 AC092354.1-201ENST00000606057 376 ntBASIC2□□□□□ -2.09
TM9SF3Q9HD45 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2□□□□□ -2.09
TM9SF3Q9HD45 AC138749.5-201ENST00000611461 208 ntBASIC2□□□□□ -2.09
TM9SF3Q9HD45 AL365204.3-201ENST00000612448 685 ntBASIC2□□□□□ -2.09
TM9SF3Q9HD45 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2□□□□□ -2.09
TM9SF3Q9HD45 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2□□□□□ -2.09
TM9SF3Q9HD45 AC116165.2-201ENST00000616705 206 ntBASIC2□□□□□ -2.09
TM9SF3Q9HD45 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2□□□□□ -2.09
TM9SF3Q9HD45 AP000770.2-201ENST00000623694 100 ntBASIC2□□□□□ -2.09
TM9SF3Q9HD45 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
TM9SF3Q9HD45 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2□□□□□ -2.09
TM9SF3Q9HD45 ANKRD20A17P-201ENST00000511745 1330 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 SNORD56.2-201ENST00000363242 71 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 RNA5SP160-201ENST00000364866 120 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 RNA5SP489-201ENST00000410986 109 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 AC009518.2-201ENST00000418056 731 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 AL591212.2-201ENST00000433923 257 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 TAF9P1-201ENST00000445421 515 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 TAF9P2-201ENST00000454958 515 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 RNA5SP182-201ENST00000516064 82 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 Y_RNA.689-201ENST00000516589 107 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 RNU6-1315P-201ENST00000517187 99 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 RNU6-586P-201ENST00000517265 104 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 AC106038.2-201ENST00000520706 568 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 AK6P1-201ENST00000540219 478 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 AC145350.1-201ENST00000567426 208 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 ELOCP5-201ENST00000604924 333 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 RNU6-87P-201ENST00000607561 108 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 AC009878.1-201ENST00000621819 340 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 YWHAEP7-203ENST00000622054 312 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 MTND5P42-201ENST00000637720 498 ntBASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.99□□□□□ -2.09
TM9SF3Q9HD45 RNU1-17P-201ENST00000363022 152 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 Y_RNA.140-201ENST00000363474 103 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 SNORA75B-201ENST00000384053 137 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 RNU1-57P-201ENST00000384491 166 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 MIR518D-201ENST00000385014 87 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 MT-TH-201ENST00000387441 69 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 RNA5SP213-201ENST00000391031 106 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 SNORA40.18-201ENST00000391200 128 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 SNORA40C-201ENST00000391285 128 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 RNU6-1025P-201ENST00000410629 104 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 ELOCP4-201ENST00000420090 333 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC244636.1-201ENST00000421152 228 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 CYCSP46-201ENST00000423569 204 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 MTND4P20-201ENST00000424125 869 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC027124.2-201ENST00000428249 105 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC119618.1-201ENST00000434191 222 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC104850.1-201ENST00000435940 476 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AL022238.1-201ENST00000442557 355 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 MTND1P12-201ENST00000455231 147 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 HMGB3P17-201ENST00000504195 649 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 FAM92A1P2-202ENST00000504766 877 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 RNU6-914P-201ENST00000516749 109 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 RNA5SP364-201ENST00000516938 78 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 DUXAP5-201ENST00000529668 529 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 RPL21P5-201ENST00000554662 472 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC110588.1-201ENST00000559699 137 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC025678.1-201ENST00000567861 338 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC073410.2-201ENST00000603240 332 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC174048.1-201ENST00000603389 144 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC009314.1-201ENST00000603871 304 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AL158032.1-201ENST00000605401 106 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 MIR15A-201ENST00000607334 83 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 DUXAP9-208ENST00000622815 614 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 AC091931.1-201ENST00000623488 728 ntBASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.98□□□□□ -2.09
TM9SF3Q9HD45 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.97□□□□□ -2.09
TM9SF3Q9HD45 Y_RNA.534-201ENST00000384599 112 ntBASIC1.97□□□□□ -2.09
TM9SF3Q9HD45 SNORA26.8-201ENST00000391306 124 ntBASIC1.97□□□□□ -2.09
TM9SF3Q9HD45 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.97□□□□□ -2.09
TM9SF3Q9HD45 AC006366.1-201ENST00000422002 759 ntBASIC1.97□□□□□ -2.09
TM9SF3Q9HD45 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.97□□□□□ -2.09
TM9SF3Q9HD45 AL365203.2-201ENST00000423444 196 ntBASIC1.97□□□□□ -2.09
TM9SF3Q9HD45 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC1.97□□□□□ -2.09
TM9SF3Q9HD45 USP9YP15-201ENST00000442391 422 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 132.5 ms