Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 SNORA1.3-201ENST00000384676 136 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 Y_RNA.577-201ENST00000384794 101 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 Y_RNA.645-201ENST00000391229 102 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 AL138885.1-201ENST00000405921 675 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 NUP35P1-201ENST00000422734 947 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 EIF4EP2-201ENST00000422816 654 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 RPL21P10-201ENST00000463521 490 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 RNU4-77P-201ENST00000516692 156 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 MIR2276-201ENST00000516886 89 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 SNORA31.18-201ENST00000517043 134 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 NDUFB9P3-201ENST00000521269 501 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 AC024153.1-201ENST00000603103 365 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 SNORD58B-201ENST00000607313 66 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 AC009318.2-201ENST00000610917 651 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 U7.8-201ENST00000619968 63 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 AC097372.5-201ENST00000623665 376 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AC005592.1-201ENST00000566527 1640 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 ZNF299P-201ENST00000406845 1804 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 CDC27P3-201ENST00000635418 1910 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AC002546.1-201ENST00000588041 2504 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 Y_RNA.144-201ENST00000363521 113 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 Y_RNA.314-201ENST00000365114 102 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 RNU1-100P-201ENST00000365255 165 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 RNA5SP171-201ENST00000391071 115 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 MIR548F4-201ENST00000408515 105 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AP000907.1-201ENST00000428428 510 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AL590664.1-201ENST00000448065 339 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AC079354.2-201ENST00000453523 154 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 RNU6-764P-201ENST00000516396 105 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AC023442.1-201ENST00000531247 422 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 TGIF1P1-201ENST00000558095 802 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 MIR5696-201ENST00000578474 85 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AL451007.1-201ENST00000595491 289 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AP000942.4-201ENST00000604811 241 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 AC002076.2-201ENST00000617362 122 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 MIR6076-201ENST00000617521 113 ntBASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PCIF1Q9H4Z3 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 RNU6-227P-201ENST00000362865 103 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 Y_RNA.485-201ENST00000384395 102 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AC126124.2-201ENST00000413542 321 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AL356968.1-201ENST00000416622 474 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 MTCYBP10-201ENST00000424905 650 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 YME1L1P1-201ENST00000429435 297 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 CHEK2P4-201ENST00000450340 246 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AC008155.2-201ENST00000464337 397 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AC128713.1-201ENST00000471495 306 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 RPL30P14-201ENST00000482744 348 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 RPL23AP49-201ENST00000492925 468 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AC114801.2-201ENST00000503825 781 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 FCF1P8-201ENST00000510322 597 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 NDUFB4P9-201ENST00000511646 388 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 GNAI2P1-201ENST00000541815 315 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AL117187.1-201ENST00000555482 181 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AC006557.5-201ENST00000603126 811 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AC104695.3-201ENST00000604052 296 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AL162713.1-201ENST00000604480 262 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 AL606534.2-204ENST00000635008 178 ntBASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.69□□□□□ -1.82
PCIF1Q9H4Z3 MTND5P7-201ENST00000413558 1798 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms