Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 AC006504.8-201ENST00000621046 635 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
NKX3-1Q99801 CASC19-280ENST00000642102 1351 ntBASIC2.43□□□□□ -2.02
NKX3-1Q99801 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.43□□□□□ -2.02
NKX3-1Q99801 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
NKX3-1Q99801 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.43□□□□□ -2.02
NKX3-1Q99801 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
NKX3-1Q99801 AC080100.1-201ENST00000624239 5356 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 RNU1-105P-201ENST00000363470 161 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
NKX3-1Q99801 MIR34A-201ENST00000385130 110 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 RPL21P75-201ENST00000396599 483 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 RPL21P28-201ENST00000401418 483 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 AL162578.1-201ENST00000406202 378 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.42□□□□□ -2.02
NKX3-1Q99801 RNU6-373P-201ENST00000411247 98 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.42□□□□□ -2.02
NKX3-1Q99801 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.42□□□□□ -2.02
NKX3-1Q99801 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.42□□□□□ -2.02
NKX3-1Q99801 HIGD1AP2-201ENST00000446367 280 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.42□□□□□ -2.02
NKX3-1Q99801 NIPA2P5-201ENST00000452282 464 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.42□□□□□ -2.02
NKX3-1Q99801 RPL21P39-201ENST00000463605 483 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 RPS29P26-201ENST00000477483 171 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 AL049873.1-201ENST00000480540 376 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 AC087190.1-201ENST00000484462 480 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 AC093591.1-201ENST00000491435 481 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 RPL21P16-201ENST00000495531 483 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 AC018710.1-201ENST00000506509 158 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.42□□□□□ -2.02
NKX3-1Q99801 AC114781.4-201ENST00000513707 639 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 AC090136.1-201ENST00000520009 240 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 AC010620.2-201ENST00000600135 313 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 MIR7106-201ENST00000612419 65 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 Z69720.2-201ENST00000624755 279 ntBASIC2.42□□□□□ -2.02
NKX3-1Q99801 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
NKX3-1Q99801 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
NKX3-1Q99801 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.41□□□□□ -2.02
NKX3-1Q99801 U3.12-201ENST00000364498 214 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 Y_RNA.480-201ENST00000384364 102 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 SNORD73A-201ENST00000386062 65 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
NKX3-1Q99801 AL133475.1-201ENST00000404414 305 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 EEF1A1P41-201ENST00000414667 207 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 AL513185.2-201ENST00000425543 193 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.41□□□□□ -2.02
NKX3-1Q99801 AC004383.1-201ENST00000438135 289 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 RNU7-66P-201ENST00000459469 62 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 RPL23AP45-201ENST00000476406 468 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 RPL31P41-201ENST00000477967 372 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 MRPL42P6-201ENST00000486397 371 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 AC026801.1-201ENST00000497178 464 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
NKX3-1Q99801 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 FAM206BP-201ENST00000510179 541 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.41□□□□□ -2.02
NKX3-1Q99801 SCARNA17.1-201ENST00000516211 143 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 SCARNA17.2-201ENST00000516334 143 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 SNORA9.3-201ENST00000516383 129 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 RNU6-1069P-201ENST00000516612 133 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 ACA59.2-201ENST00000517061 156 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.41□□□□□ -2.02
NKX3-1Q99801 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.41□□□□□ -2.02
NKX3-1Q99801 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 MIR4801-201ENST00000582704 82 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 ZNF861P-201ENST00000588126 639 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 AC060780.3-201ENST00000589464 80 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 AL137843.1-201ENST00000605078 385 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 RNU6-85P-201ENST00000605989 107 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 AL357078.3-201ENST00000607528 618 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 SCARNA17.4-201ENST00000614296 143 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 FAM157A-202ENST00000615155 405 ntBASIC2.41□□□□□ -2.02
NKX3-1Q99801 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.41□□□□□ -2.02
NKX3-1Q99801 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.41□□□□□ -2.02
NKX3-1Q99801 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.41□□□□□ -2.02
NKX3-1Q99801 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.41□□□□□ -2.02
NKX3-1Q99801 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.4□□□□□ -2.02
NKX3-1Q99801 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.4□□□□□ -2.02
NKX3-1Q99801 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
NKX3-1Q99801 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
NKX3-1Q99801 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.4□□□□□ -2.03
NKX3-1Q99801 AC121333.1-201ENST00000567488 2709 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.4□□□□□ -2.03
NKX3-1Q99801 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
NKX3-1Q99801 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.4□□□□□ -2.03
NKX3-1Q99801 SNORD21-201ENST00000383953 95 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 SNORA32.2-201ENST00000384049 122 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 RNU6-831P-201ENST00000384548 107 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 SNORA44-201ENST00000384584 132 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 MT-TL1-201ENST00000386347 75 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 AL356776.1-201ENST00000406574 447 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 SNORD56-201ENST00000413522 71 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 UBBP3-201ENST00000445497 241 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 AC008571.1-201ENST00000467232 300 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 MTCO2P30-201ENST00000503662 364 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 AC116353.2-201ENST00000505332 712 ntBASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms