Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.32□□□□□ -1.88
CLRN3Q8NCR9 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.32□□□□□ -1.88
CLRN3Q8NCR9 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 SNURFL-201ENST00000309296 343 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 RNU6-874P-201ENST00000362390 105 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 RNU6-655P-201ENST00000362858 107 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 RNU6-529P-201ENST00000363383 104 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 RNA5SP507-201ENST00000363603 121 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 RNU6-137P-201ENST00000363680 108 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 SNORA36A-201ENST00000384221 132 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 Y_RNA.527-201ENST00000384573 102 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 MIR765-201ENST00000390226 114 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 Y_RNA.645-201ENST00000391229 102 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 AC093162.1-201ENST00000419682 124 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 AC096644.2-201ENST00000429278 159 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 Z98742.2-201ENST00000431564 187 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 AC092647.2-201ENST00000452998 253 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 HMGB1P35-201ENST00000503360 598 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 RNU5F-2P-201ENST00000516066 82 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 SNORA31.6-201ENST00000516241 130 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 RNU6-1137P-201ENST00000517073 99 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 HMGN2P6-201ENST00000551091 273 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 AC090617.3-201ENST00000573670 475 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 AL034555.1-201ENST00000604816 211 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 SNORA51-201ENST00000606420 132 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 RNU1-30P-201ENST00000606575 163 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 MAPK10-362ENST00000641864 4484 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 Z75746.1-201ENST00000440243 2080 ntBASIC3.31□□□□□ -1.88
CLRN3Q8NCR9 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 RPL23P2-201ENST00000320371 421 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 RNU6-486P-201ENST00000363116 107 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 Y_RNA.106-201ENST00000363189 100 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 RNY3P11-201ENST00000364153 102 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 Y_RNA.380-201ENST00000365663 111 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 Y_RNA.485-201ENST00000384395 102 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 RNU6-541P-201ENST00000384709 110 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 MIR105-2-201ENST00000385083 81 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 RPL37P18-201ENST00000411602 243 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 USP9YP16-201ENST00000430287 407 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 CHEK2P4-201ENST00000450340 246 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 USP9YP23-201ENST00000455085 407 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 RPL36AP41-201ENST00000493820 306 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 SNORA31.16-201ENST00000516773 139 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 APPL2-203ENST00000546731 684 ntTSL 2 BASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 CYP4A27P-201ENST00000567218 190 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 AC008739.2-201ENST00000597006 317 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 AC104695.3-201ENST00000604052 296 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 AC093799.2-201ENST00000610062 578 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
CLRN3Q8NCR9 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 AL021368.2-201ENST00000606125 5352 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 Y_RNA.319-201ENST00000365138 92 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 Y_RNA.358-201ENST00000365491 99 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 SNORA63.7-201ENST00000365579 123 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 RNU6-823P-201ENST00000391042 103 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 UBA52P6-201ENST00000399822 382 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 RNU6ATAC7P-201ENST00000408111 127 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 AIMP1P2-201ENST00000425294 312 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 MTCO3P8-201ENST00000453691 755 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 RPL27AP5-201ENST00000469428 449 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 AC006463.2-201ENST00000473326 348 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 HMGN1P10-201ENST00000474557 553 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 AC092185.1-201ENST00000491371 97 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 SCARNA17.1-201ENST00000516211 143 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 SCARNA17.2-201ENST00000516334 143 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 AC040926.1-201ENST00000530195 238 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 MIR3923-201ENST00000579521 83 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 RPS29P30-201ENST00000600975 111 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 SCARNA17.4-201ENST00000614296 143 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 AL078596.1-201ENST00000624856 447 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 SNORA50A-202ENST00000629536 136 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 MTND5P16-201ENST00000460269 1703 ntBASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CLRN3Q8NCR9 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms