Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PGBD4P6-201ENST00000421501 610 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 TOMM20P4-201ENST00000427861 435 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 CALM1P1-201ENST00000442082 433 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 HIGD1AP2-201ENST00000446367 280 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2□□□□□ -2.09
SKA3Q8IX90 SNORA59A-201ENST00000459326 152 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 MTND3P25-201ENST00000509243 135 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2□□□□□ -2.09
SKA3Q8IX90 AC010493.1-201ENST00000513479 292 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 OR5AQ1P-201ENST00000527596 927 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 AC010186.2-204ENST00000537668 439 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2□□□□□ -2.09
SKA3Q8IX90 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2□□□□□ -2.09
SKA3Q8IX90 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2□□□□□ -2.09
SKA3Q8IX90 AC002984.1-201ENST00000591692 448 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 BNIP3P30-201ENST00000601184 574 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 AC008945.2-201ENST00000606056 604 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 RMST_4.1-201ENST00000616886 107 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2□□□□□ -2.09
SKA3Q8IX90 AC098657.3-201ENST00000620434 263 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 MIR6766-201ENST00000622641 72 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 AC012640.5-201ENST00000623897 319 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 AC138627.2-201ENST00000624202 601 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 SCARNA4-202ENST00000625402 129 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 AP000553.5-201ENST00000641933 54 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 AC006020.1-201ENST00000420179 1854 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2□□□□□ -2.09
SKA3Q8IX90 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
SKA3Q8IX90 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
SKA3Q8IX90 OR56A5-201ENST00000340110 738 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
SKA3Q8IX90 RNU6-715P-201ENST00000365204 103 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.99□□□□□ -2.09
SKA3Q8IX90 RNU6-45P-201ENST00000384471 107 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 RNU6-606P-201ENST00000384721 111 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
SKA3Q8IX90 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
SKA3Q8IX90 AC068050.1-201ENST00000394891 380 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 AL591416.1-201ENST00000404015 867 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 GSTA9P-201ENST00000406231 611 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 AL355497.1-201ENST00000406262 551 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.99□□□□□ -2.09
SKA3Q8IX90 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.99□□□□□ -2.09
SKA3Q8IX90 BX276092.3-201ENST00000424182 230 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 AL451074.3-201ENST00000437709 472 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC1.99□□□□□ -2.09
SKA3Q8IX90 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.99□□□□□ -2.09
SKA3Q8IX90 MTND1P29-201ENST00000448112 647 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 AC112771.1-201ENST00000463581 102 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 AC090515.1-201ENST00000465295 476 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 MED28P2-201ENST00000475771 317 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 MTAPP1-201ENST00000489154 819 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 RPL22P13-201ENST00000493291 347 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 AC092436.1-201ENST00000506450 503 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 RNU6-1178P-201ENST00000516674 107 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.99□□□□□ -2.09
SKA3Q8IX90 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.99□□□□□ -2.09
SKA3Q8IX90 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
SKA3Q8IX90 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.99□□□□□ -2.09
SKA3Q8IX90 AL391646.1-201ENST00000603860 190 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 APOOP1-201ENST00000604695 592 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 AL121917.1-203ENST00000605534 577 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 AC069294.1-201ENST00000608397 350 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.99□□□□□ -2.09
SKA3Q8IX90 AL160394.1-201ENST00000624765 724 ntBASIC1.99□□□□□ -2.09
SKA3Q8IX90 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SKA3Q8IX90 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC1.99□□□□□ -2.09
SKA3Q8IX90 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SKA3Q8IX90 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SKA3Q8IX90 Y_RNA.582-201ENST00000391023 95 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.98□□□□□ -2.09
SKA3Q8IX90 RNU4-53P-201ENST00000410828 140 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.98□□□□□ -2.09
SKA3Q8IX90 BTF3L4P1-201ENST00000413813 468 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 MTCO2P19-201ENST00000427513 598 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 AL669831.1-202ENST00000428504 417 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 GTF2IP13-201ENST00000438487 386 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.98□□□□□ -2.09
SKA3Q8IX90 IPO7P1-201ENST00000442031 636 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.98□□□□□ -2.09
SKA3Q8IX90 MTND1P18-201ENST00000448191 573 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 AL118520.1-201ENST00000450770 291 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 EEF1B2P7-201ENST00000451177 676 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 RNU7-63P-201ENST00000459054 62 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 AC104435.1-201ENST00000483483 166 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 RPL36AP48-201ENST00000485521 314 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 RPL23AP49-201ENST00000492925 468 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 HMGB1P29-201ENST00000505659 499 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 MTCO3P9-201ENST00000506989 781 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 AC108078.1-201ENST00000508073 725 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 AC091133.4-201ENST00000511142 308 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC1.98□□□□□ -2.09
SKA3Q8IX90 MTND1P15-201ENST00000579262 949 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 LRRC37A5P-203ENST00000580181 585 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.98□□□□□ -2.09
SKA3Q8IX90 AC087683.1-201ENST00000591187 441 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 AC048344.4-201ENST00000619744 527 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 AL031601.2-202ENST00000622650 282 ntBASIC1.98□□□□□ -2.09
SKA3Q8IX90 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 204.2 ms