Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 MTCO3P29-201ENST00000432119 779 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.81□□□□□ -1.8
USP53Q70EK8 RPL21P2-201ENST00000440049 481 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 CYCSP32-201ENST00000440548 321 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 RPL32P34-201ENST00000486380 400 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 RNU1-95P-201ENST00000516357 160 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 RNU1-128P-201ENST00000516704 160 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.81□□□□□ -1.8
USP53Q70EK8 AC100812.1-201ENST00000607622 580 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 AC243829.7-201ENST00000633081 225 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 AC110491.1-201ENST00000562191 2010 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.81□□□□□ -1.8
USP53Q70EK8 AP001486.2-201ENST00000561652 5113 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USP53Q70EK8 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.8□□□□□ -1.8
USP53Q70EK8 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP53Q70EK8 AC073346.2-201ENST00000624724 2058 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP53Q70EK8 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
USP53Q70EK8 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 RNU4-50P-201ENST00000364361 141 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 RNA5SP72-201ENST00000364442 117 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 MIR628-201ENST00000385229 95 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 MT-TG-201ENST00000387429 68 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
USP53Q70EK8 RPL21P1-201ENST00000399532 476 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 MIR190B-201ENST00000401119 79 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 SNORA3C-201ENST00000408792 125 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.8□□□□□ -1.8
USP53Q70EK8 OSTCP8-201ENST00000445117 448 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 AL031659.1-201ENST00000447075 539 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 MRPL42P6-201ENST00000486397 371 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 AC109329.1-201ENST00000518744 317 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC3.8□□□□□ -1.8
USP53Q70EK8 YPEL5P3-201ENST00000547227 352 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 AC110588.1-201ENST00000559699 137 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 AL360157.1-201ENST00000565962 87 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.8□□□□□ -1.8
USP53Q70EK8 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.8□□□□□ -1.8
USP53Q70EK8 AC002076.2-201ENST00000617362 122 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 AL773545.4-201ENST00000637262 310 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 AL513478.4-201ENST00000641636 310 ntBASIC3.8□□□□□ -1.8
USP53Q70EK8 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.8□□□□□ -1.8
USP53Q70EK8 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
USP53Q70EK8 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.8□□□□□ -1.8
USP53Q70EK8 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.8□□□□□ -1.8
USP53Q70EK8 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP53Q70EK8 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.8□□□□□ -1.8
USP53Q70EK8 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.8□□□□□ -1.8
USP53Q70EK8 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.79□□□□□ -1.8
USP53Q70EK8 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.79□□□□□ -1.8
USP53Q70EK8 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
USP53Q70EK8 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP53Q70EK8 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP53Q70EK8 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP53Q70EK8 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP53Q70EK8 Y_RNA.405-201ENST00000383979 100 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 SNORA5A-201ENST00000384111 134 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 Y_RNA.451-201ENST00000384200 100 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 Y_RNA.524-201ENST00000384564 100 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 Y_RNA.561-201ENST00000384694 100 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
USP53Q70EK8 MIR1251-201ENST00000408552 70 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 RNU6-1245P-201ENST00000411130 106 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.79□□□□□ -1.8
USP53Q70EK8 AC074117.2-201ENST00000417130 397 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.79□□□□□ -1.8
USP53Q70EK8 AL358453.1-201ENST00000422522 250 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.79□□□□□ -1.8
USP53Q70EK8 AC007969.2-201ENST00000441891 191 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.79□□□□□ -1.8
USP53Q70EK8 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.79□□□□□ -1.8
USP53Q70EK8 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.79□□□□□ -1.8
USP53Q70EK8 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.79□□□□□ -1.8
USP53Q70EK8 RNU7-175P-201ENST00000515915 61 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP53Q70EK8 AC021739.1-201ENST00000559631 174 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.79□□□□□ -1.8
USP53Q70EK8 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.79□□□□□ -1.8
USP53Q70EK8 MYL12BP1-201ENST00000569826 507 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.79□□□□□ -1.8
USP53Q70EK8 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC3.79□□□□□ -1.8
USP53Q70EK8 RPL23AP78-201ENST00000599928 470 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 AL356157.2-201ENST00000605122 111 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.79□□□□□ -1.8
USP53Q70EK8 AC107871.2-201ENST00000612894 502 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 AC024581.2-201ENST00000619986 252 ntBASIC3.79□□□□□ -1.8
USP53Q70EK8 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
USP53Q70EK8 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP53Q70EK8 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.78□□□□□ -1.8
USP53Q70EK8 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
USP53Q70EK8 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
USP53Q70EK8 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.78□□□□□ -1.8
USP53Q70EK8 SNORD32A-201ENST00000364805 84 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 RNU4-9P-201ENST00000364951 139 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 RNU6-1280P-201ENST00000365211 107 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
USP53Q70EK8 SNORA51.11-201ENST00000384442 131 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 Y_RNA.512-201ENST00000384518 102 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 185 ms