| HES3 | Q5TGS1 | AC005696.2-201 | ENST00000610120 | 626 nt | TSL 3 BASIC | 1.35 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | SLC9C2-201 | ENST00000367714 | 4428 nt | APPRIS P1 TSL 1 (best) BASIC | 1.35 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | MUC15-203 | ENST00000455601 | 3156 nt | APPRIS P1 TSL 2 BASIC | 1.35 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | ANKRD36BP1-202 | ENST00000604892 | 1417 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AC069228.1-201 | ENST00000546936 | 1615 nt | TSL 3 BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | Y_RNA.33-201 | ENST00000362591 | 102 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | FTH1P15-201 | ENST00000406984 | 280 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AC009518.2-201 | ENST00000418056 | 731 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AC138623.1-201 | ENST00000418060 | 216 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | PGBD4P6-201 | ENST00000421501 | 610 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AL022400.1-201 | ENST00000423946 | 935 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | MTCO2P20-201 | ENST00000437339 | 673 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | MTND3P1-201 | ENST00000441336 | 220 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AL031313.1-201 | ENST00000448435 | 256 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AC106821.1-201 | ENST00000502861 | 572 nt | TSL 5 BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AC109927.2-201 | ENST00000506416 | 303 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AC008869.1-201 | ENST00000510938 | 442 nt | TSL 2 BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AC013828.2-201 | ENST00000532487 | 235 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AL356432.3-201 | ENST00000568952 | 465 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | PTP4A1-204 | ENST00000578299 | 135 nt | TSL 2 BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | BNIP3P25-201 | ENST00000596023 | 559 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AC104819.3-201 | ENST00000603264 | 540 nt | TSL 4 BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AC022893.3-201 | ENST00000607665 | 437 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | PDCD6IPP1-201 | ENST00000615124 | 579 nt | TSL 2 BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AL356596.1-201 | ENST00000624230 | 379 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | AC068733.3-201 | ENST00000632757 | 269 nt | TSL 3 BASIC | 1.34 | □□□□□ -2.19 | | |
| HES3 | Q5TGS1 | ZNF736P9Y-201 | ENST00000439586 | 1345 nt | BASIC | 1.34 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AP000648.3-201 | ENST00000623539 | 4507 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | PPP1R3A-201 | ENST00000284601 | 4384 nt | APPRIS P1 TSL 1 (best) BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | MT-CYB-201 | ENST00000361789 | 1141 nt | APPRIS P1 BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | U8.1-201 | ENST00000362843 | 134 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNY1-201 | ENST00000364228 | 113 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AL133475.1-201 | ENST00000404414 | 305 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNU6-955P-201 | ENST00000410497 | 104 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | PIGPP2-201 | ENST00000411569 | 458 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | OR9R1P-201 | ENST00000412200 | 877 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AL162254.1-202 | ENST00000419604 | 497 nt | TSL 5 BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | ATP6V0E1P3-201 | ENST00000420036 | 246 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | EDNRB-AS1-201 | ENST00000422405 | 601 nt | TSL 5 BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | EIF4EP2-201 | ENST00000422816 | 654 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AL731563.2-201 | ENST00000431293 | 291 nt | TSL 5 BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | LINC00459-201 | ENST00000431656 | 376 nt | TSL 2 BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | OPA1-AS1-201 | ENST00000433105 | 492 nt | TSL 3 BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | IFNA20P-201 | ENST00000436840 | 528 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC006512.1-201 | ENST00000468816 | 291 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | CTD-2350J17.1-202 | ENST00000510456 | 360 nt | TSL 2 BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNU6-1092P-201 | ENST00000516955 | 87 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNU6-667P-201 | ENST00000517186 | 102 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC114550.2-201 | ENST00000524008 | 397 nt | TSL 3 BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC068205.1-204 | ENST00000532989 | 481 nt | TSL 3 BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | MTCYBP23-201 | ENST00000558717 | 1102 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | MIR3146-201 | ENST00000580367 | 79 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNF219-AS1-205 | ENST00000605996 | 792 nt | TSL 5 BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC080013.3-201 | ENST00000606839 | 578 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC144521.1-201 | ENST00000607148 | 956 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC099842.1-201 | ENST00000619919 | 596 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AL133216.2-202 | ENST00000634512 | 349 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | ZNF260-205 | ENST00000593142 | 4047 nt | APPRIS P1 TSL 1 (best) BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | MT-ND2-201 | ENST00000361453 | 1042 nt | APPRIS P1 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | MIR96-201 | ENST00000362288 | 78 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | Y_RNA.112-201 | ENST00000363250 | 102 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNU1-22P-201 | ENST00000363334 | 158 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNU6-190P-201 | ENST00000384154 | 102 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNU6-611P-201 | ENST00000384276 | 104 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNU6-843P-201 | ENST00000384454 | 104 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | Y_RNA.540-201 | ENST00000384638 | 111 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | MIR186-201 | ENST00000384988 | 86 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC091705.1-201 | ENST00000412197 | 209 nt | TSL 5 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC008267.5-201 | ENST00000424928 | 265 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AL589986.2-201 | ENST00000429352 | 397 nt | TSL 2 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | LINC02336-201 | ENST00000434117 | 330 nt | TSL 3 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC006333.1-202 | ENST00000440504 | 555 nt | TSL 4 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | ZNF736P11Y-201 | ENST00000442535 | 1213 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | LINC01758-201 | ENST00000448001 | 458 nt | TSL 3 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AL157373.1-201 | ENST00000456036 | 276 nt | TSL 3 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | HYDIN2-201 | ENST00000493714 | 554 nt | TSL 4 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC092436.3-201 | ENST00000511788 | 257 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNU2-53P-201 | ENST00000516257 | 147 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNU2-10P-201 | ENST00000516375 | 211 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC105185.1-201 | ENST00000518705 | 535 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC023632.5-201 | ENST00000521010 | 491 nt | TSL 3 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC025871.1-201 | ENST00000523935 | 443 nt | TSL 2 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | MTATP6P15-201 | ENST00000527233 | 835 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AP000763.2-201 | ENST00000540641 | 163 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | LINC02464-201 | ENST00000552060 | 368 nt | TSL 2 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC008015.1-201 | ENST00000555505 | 465 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC084756.1-201 | ENST00000558237 | 606 nt | TSL 5 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | MIR4713-201 | ENST00000582691 | 75 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AC093788.1-201 | ENST00000609356 | 927 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | U1.36-201 | ENST00000620684 | 176 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | AL353651.2-201 | ENST00000635706 | 559 nt | TSL 5 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | SLC25A46-204 | ENST00000504098 | 2345 nt | TSL 5 BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | ABCA5-201 | ENST00000392676 | 8220 nt | APPRIS P1 TSL 1 (best) BASIC | 1.32 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | CUL3-203 | ENST00000409096 | 2701 nt | TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNU6-858P-201 | ENST00000362436 | 107 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNU6-433P-201 | ENST00000363216 | 104 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNU6-511P-201 | ENST00000363496 | 107 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | RNY3P13-201 | ENST00000365542 | 102 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | SMIM11P1-201 | ENST00000369586 | 178 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| HES3 | Q5TGS1 | MIR613-201 | ENST00000385248 | 95 nt | BASIC | 1.31 | □□□□□ -2.2 | | |