Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 MIR5002-201ENST00000584713 97 ntBASIC2.04□□□□□ -2.08
LIM2P55344 RSL24D1P11-201ENST00000591045 491 ntBASIC2.04□□□□□ -2.08
LIM2P55344 RN7SKP299-201ENST00000606679 301 ntBASIC2.04□□□□□ -2.08
LIM2P55344 AC011890.2-201ENST00000613393 294 ntBASIC2.04□□□□□ -2.08
LIM2P55344 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.04□□□□□ -2.08
LIM2P55344 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.04□□□□□ -2.08
LIM2P55344 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
LIM2P55344 ZNF658B-202ENST00000615961 3375 ntBASIC2.04□□□□□ -2.08
LIM2P55344 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
LIM2P55344 Z75746.1-201ENST00000440243 2080 ntBASIC2.03□□□□□ -2.08
LIM2P55344 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.03□□□□□ -2.08
LIM2P55344 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
LIM2P55344 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
LIM2P55344 RNU6-1010P-201ENST00000362757 107 ntBASIC2.03□□□□□ -2.08
LIM2P55344 RNU6-1029P-201ENST00000384109 107 ntBASIC2.03□□□□□ -2.08
LIM2P55344 RNU6-45P-201ENST00000384471 107 ntBASIC2.03□□□□□ -2.08
LIM2P55344 SNORA11.4-201ENST00000408823 129 ntBASIC2.03□□□□□ -2.08
LIM2P55344 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.03□□□□□ -2.08
LIM2P55344 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.03□□□□□ -2.08
LIM2P55344 RPL21P90-201ENST00000415692 466 ntBASIC2.03□□□□□ -2.08
LIM2P55344 MTND1P18-201ENST00000448191 573 ntBASIC2.03□□□□□ -2.08
LIM2P55344 AL118520.1-201ENST00000450770 291 ntBASIC2.03□□□□□ -2.08
LIM2P55344 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.03□□□□□ -2.08
LIM2P55344 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.03□□□□□ -2.08
LIM2P55344 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.03□□□□□ -2.08
LIM2P55344 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.03□□□□□ -2.08
LIM2P55344 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.03□□□□□ -2.08
LIM2P55344 MTCO3P23-201ENST00000561363 289 ntBASIC2.03□□□□□ -2.08
LIM2P55344 AC136619.2-201ENST00000563361 631 ntBASIC2.03□□□□□ -2.08
LIM2P55344 MIR4658-201ENST00000584344 65 ntBASIC2.03□□□□□ -2.08
LIM2P55344 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC2.03□□□□□ -2.08
LIM2P55344 RPS15AP11-201ENST00000594193 385 ntBASIC2.03□□□□□ -2.08
LIM2P55344 Z84480.1-201ENST00000605131 311 ntBASIC2.03□□□□□ -2.08
LIM2P55344 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.03□□□□□ -2.08
LIM2P55344 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.03□□□□□ -2.08
LIM2P55344 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.03□□□□□ -2.08
LIM2P55344 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
LIM2P55344 OR56A5-201ENST00000340110 738 ntBASIC2.02□□□□□ -2.09
LIM2P55344 RNU6-116P-201ENST00000384042 109 ntBASIC2.02□□□□□ -2.09
LIM2P55344 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.02□□□□□ -2.09
LIM2P55344 RN7SKP223-201ENST00000410582 62 ntBASIC2.02□□□□□ -2.09
LIM2P55344 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.02□□□□□ -2.09
LIM2P55344 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.02□□□□□ -2.09
LIM2P55344 AC073464.1-201ENST00000429823 534 ntBASIC2.02□□□□□ -2.09
LIM2P55344 AL031659.1-201ENST00000447075 539 ntBASIC2.02□□□□□ -2.09
LIM2P55344 MTND1P29-201ENST00000448112 647 ntBASIC2.02□□□□□ -2.09
LIM2P55344 AL353705.4-201ENST00000449661 238 ntBASIC2.02□□□□□ -2.09
LIM2P55344 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.02□□□□□ -2.09
LIM2P55344 AC074344.1-201ENST00000512823 224 ntBASIC2.02□□□□□ -2.09
LIM2P55344 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.02□□□□□ -2.09
LIM2P55344 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.02□□□□□ -2.09
LIM2P55344 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.02□□□□□ -2.09
LIM2P55344 AC006362.1-201ENST00000567392 174 ntBASIC2.02□□□□□ -2.09
LIM2P55344 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.02□□□□□ -2.09
LIM2P55344 AC119751.7-201ENST00000600494 245 ntBASIC2.02□□□□□ -2.09
LIM2P55344 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.02□□□□□ -2.09
LIM2P55344 U4atac.1-201ENST00000618345 95 ntBASIC2.02□□□□□ -2.09
LIM2P55344 FO624990.1-201ENST00000636373 85 ntBASIC2.02□□□□□ -2.09
LIM2P55344 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.02□□□□□ -2.09
LIM2P55344 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
LIM2P55344 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.02□□□□□ -2.09
LIM2P55344 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
LIM2P55344 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.01□□□□□ -2.09
LIM2P55344 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.01□□□□□ -2.09
LIM2P55344 RNA5SP126-201ENST00000365092 109 ntBASIC2.01□□□□□ -2.09
LIM2P55344 RNU6-1042P-201ENST00000384204 107 ntBASIC2.01□□□□□ -2.09
LIM2P55344 RNU6-1119P-201ENST00000384349 108 ntBASIC2.01□□□□□ -2.09
LIM2P55344 Y_RNA.480-201ENST00000384364 102 ntBASIC2.01□□□□□ -2.09
LIM2P55344 GSTA9P-201ENST00000406231 611 ntBASIC2.01□□□□□ -2.09
LIM2P55344 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.01□□□□□ -2.09
LIM2P55344 RNU2-3P-201ENST00000410144 191 ntBASIC2.01□□□□□ -2.09
LIM2P55344 RNA5SP390-201ENST00000410191 113 ntBASIC2.01□□□□□ -2.09
LIM2P55344 OR9R1P-201ENST00000412200 877 ntBASIC2.01□□□□□ -2.09
LIM2P55344 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.01□□□□□ -2.09
LIM2P55344 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.01□□□□□ -2.09
LIM2P55344 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.01□□□□□ -2.09
LIM2P55344 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.01□□□□□ -2.09
LIM2P55344 AL139415.2-201ENST00000431968 163 ntBASIC2.01□□□□□ -2.09
LIM2P55344 AL358934.1-201ENST00000432346 324 ntBASIC2.01□□□□□ -2.09
LIM2P55344 CALM1P1-201ENST00000442082 433 ntBASIC2.01□□□□□ -2.09
LIM2P55344 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.01□□□□□ -2.09
LIM2P55344 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.01□□□□□ -2.09
LIM2P55344 MTATP6P26-201ENST00000445926 662 ntBASIC2.01□□□□□ -2.09
LIM2P55344 AC012308.1-201ENST00000451232 178 ntBASIC2.01□□□□□ -2.09
LIM2P55344 AL162395.1-201ENST00000457882 422 ntBASIC2.01□□□□□ -2.09
LIM2P55344 RPS3AP17-201ENST00000472594 777 ntBASIC2.01□□□□□ -2.09
LIM2P55344 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.01□□□□□ -2.09
LIM2P55344 ANXA2P1-201ENST00000505539 926 ntBASIC2.01□□□□□ -2.09
LIM2P55344 AC108078.1-201ENST00000508073 725 ntBASIC2.01□□□□□ -2.09
LIM2P55344 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.01□□□□□ -2.09
LIM2P55344 RNU1-86P-201ENST00000516108 154 ntBASIC2.01□□□□□ -2.09
LIM2P55344 RNU1-107P-201ENST00000516617 154 ntBASIC2.01□□□□□ -2.09
LIM2P55344 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.01□□□□□ -2.09
LIM2P55344 AP003034.1-201ENST00000534621 422 ntBASIC2.01□□□□□ -2.09
LIM2P55344 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.01□□□□□ -2.09
LIM2P55344 AC073539.2-201ENST00000597113 165 ntBASIC2.01□□□□□ -2.09
LIM2P55344 AC025449.1-201ENST00000603896 529 ntBASIC2.01□□□□□ -2.09
LIM2P55344 AC021646.1-201ENST00000605469 484 ntBASIC2.01□□□□□ -2.09
LIM2P55344 AL121917.1-203ENST00000605534 577 ntBASIC2.01□□□□□ -2.09
LIM2P55344 AC073534.2-201ENST00000620377 381 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms