Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
FOXA3P55318 PIGFP2-201ENST00000421400 651 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC0.63□□□□□ -2.31
FOXA3P55318 RPS4XP11-201ENST00000446897 772 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 RPL18AP17-201ENST00000455326 198 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 RNU6-150P-201ENST00000516237 95 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 RN7SKP219-201ENST00000516825 296 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.63□□□□□ -2.31
FOXA3P55318 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.63□□□□□ -2.31
FOXA3P55318 AC104072.1-201ENST00000568817 668 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 AC060771.1-201ENST00000582031 164 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 AL590240.4-201ENST00000616908 390 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 AL136313.1-201ENST00000624804 202 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
FOXA3P55318 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.63□□□□□ -2.31
FOXA3P55318 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
FOXA3P55318 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.62□□□□□ -2.31
FOXA3P55318 AL391987.6-201ENST00000305671 199 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 RNA5SP99-201ENST00000364020 114 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 RNU6-289P-201ENST00000364093 107 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 RNU6-744P-201ENST00000365557 107 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 RNU6-207P-201ENST00000384137 107 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 RNU6-1316P-201ENST00000384242 108 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 MIR532-201ENST00000385025 91 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
FOXA3P55318 AC004965.1-201ENST00000413033 213 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.62□□□□□ -2.31
FOXA3P55318 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.62□□□□□ -2.31
FOXA3P55318 AL669831.1-202ENST00000428504 417 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC0.62□□□□□ -2.31
FOXA3P55318 AL078601.1-201ENST00000444542 271 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 RPS27P1-201ENST00000450552 247 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC0.62□□□□□ -2.31
FOXA3P55318 RPL30P6-201ENST00000475925 342 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 RNU6-991P-201ENST00000516168 107 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 RNY4P37-201ENST00000516225 96 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC0.62□□□□□ -2.31
FOXA3P55318 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.62□□□□□ -2.31
FOXA3P55318 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC0.62□□□□□ -2.31
FOXA3P55318 AL731537.2-201ENST00000561565 951 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 AC015688.6-201ENST00000577737 104 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 MIR4653-201ENST00000585107 83 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 VN1R80P-201ENST00000597126 338 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC0.62□□□□□ -2.31
FOXA3P55318 AC080078.3-201ENST00000605407 463 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 AC211469.2-201ENST00000605461 205 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 AC123767.1-202ENST00000620407 817 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 AC112204.3-201ENST00000623822 332 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 ANKRD36BP1-202ENST00000604892 1417 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 AC245060.5-201ENST00000610778 3293 ntBASIC0.62□□□□□ -2.31
FOXA3P55318 AC068700.1-201ENST00000565862 3754 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 MTND5P35-201ENST00000557537 1720 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
FOXA3P55318 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
FOXA3P55318 MIR378A-201ENST00000362177 66 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 RNU6-858P-201ENST00000362436 107 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 SNORA25-201ENST00000384384 134 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 RNU6-843P-201ENST00000384454 104 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 RPL23AP32-201ENST00000395315 459 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 AL603865.2-201ENST00000401679 213 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 AL079342.2-201ENST00000403367 482 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 RNU2-64P-201ENST00000411315 191 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.61□□□□□ -2.31
FOXA3P55318 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC0.61□□□□□ -2.31
FOXA3P55318 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.61□□□□□ -2.31
FOXA3P55318 AL592045.1-201ENST00000429867 352 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 C8orf59P1-201ENST00000429930 303 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 AC245047.4-201ENST00000433189 144 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 ELOCP30-201ENST00000447108 299 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC0.61□□□□□ -2.31
FOXA3P55318 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.61□□□□□ -2.31
FOXA3P55318 snoU13.14-201ENST00000459372 104 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 AC130509.1-201ENST00000464158 433 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC0.61□□□□□ -2.31
FOXA3P55318 AL163195.1-201ENST00000496941 348 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 SNORA3.4-201ENST00000515969 96 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 RNU6-1225P-201ENST00000516336 65 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 SNORA31.19-201ENST00000517079 126 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC0.61□□□□□ -2.31
FOXA3P55318 AL133153.1-201ENST00000557756 303 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 AC025678.1-201ENST00000567861 338 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 MIR4698-201ENST00000577795 80 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 AP005136.1-201ENST00000579765 429 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.61□□□□□ -2.31
FOXA3P55318 BNIP3P30-201ENST00000601184 574 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 FAM71BP1-201ENST00000604431 523 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 AL022345.2-201ENST00000606307 135 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 BX284668.6-201ENST00000606899 438 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 AC018926.1-201ENST00000616335 435 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 AC078880.5-201ENST00000617845 421 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 AC022513.1-201ENST00000624512 117 ntBASIC0.61□□□□□ -2.31
FOXA3P55318 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.61□□□□□ -2.31
FOXA3P55318 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.61□□□□□ -2.31
FOXA3P55318 AL079343.1-201ENST00000572358 1771 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 HSBP1P2-201ENST00000299671 229 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC0.6□□□□□ -2.31
FOXA3P55318 AL161935.2-201ENST00000414627 60 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms