Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.77□□□□□ -1.97
MSH2P43246 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.77□□□□□ -1.97
MSH2P43246 RNU6-82P-201ENST00000363970 107 ntBASIC2.77□□□□□ -1.97
MSH2P43246 Y_RNA.295-201ENST00000364918 102 ntBASIC2.77□□□□□ -1.97
MSH2P43246 RNU1-100P-201ENST00000365255 165 ntBASIC2.77□□□□□ -1.97
MSH2P43246 Y_RNA.480-201ENST00000384364 102 ntBASIC2.77□□□□□ -1.97
MSH2P43246 MIR1277-201ENST00000408536 78 ntBASIC2.77□□□□□ -1.97
MSH2P43246 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.77□□□□□ -1.97
MSH2P43246 HMGN2P35-201ENST00000412164 270 ntBASIC2.77□□□□□ -1.97
MSH2P43246 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.77□□□□□ -1.97
MSH2P43246 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.77□□□□□ -1.97
MSH2P43246 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.77□□□□□ -1.97
MSH2P43246 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.77□□□□□ -1.97
MSH2P43246 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.77□□□□□ -1.97
MSH2P43246 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC2.77□□□□□ -1.97
MSH2P43246 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.77□□□□□ -1.97
MSH2P43246 AC116655.1-201ENST00000508324 901 ntBASIC2.77□□□□□ -1.97
MSH2P43246 RNU6-1038P-201ENST00000516516 104 ntBASIC2.77□□□□□ -1.97
MSH2P43246 SCARNA3-201ENST00000517097 143 ntBASIC2.77□□□□□ -1.97
MSH2P43246 AC109329.2-201ENST00000519658 482 ntBASIC2.77□□□□□ -1.97
MSH2P43246 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.77□□□□□ -1.97
MSH2P43246 AC090115.3-201ENST00000553218 849 ntBASIC2.77□□□□□ -1.97
MSH2P43246 MIR3941-201ENST00000582572 103 ntBASIC2.77□□□□□ -1.97
MSH2P43246 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
MSH2P43246 HMGB1P24-202ENST00000615653 685 ntBASIC2.77□□□□□ -1.97
MSH2P43246 AC010378.1-201ENST00000619270 362 ntBASIC2.77□□□□□ -1.97
MSH2P43246 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.77□□□□□ -1.97
MSH2P43246 AC024614.3-201ENST00000637860 256 ntBASIC2.77□□□□□ -1.97
MSH2P43246 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.77□□□□□ -1.97
MSH2P43246 Z82195.2-201ENST00000612348 18351 ntBASIC2.77□□□□□ -1.97
MSH2P43246 AL359854.1-201ENST00000614203 1594 ntBASIC2.77□□□□□ -1.97
MSH2P43246 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.77□□□□□ -1.97
MSH2P43246 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.76□□□□□ -1.97
MSH2P43246 VTRNA1-1-201ENST00000363120 99 ntBASIC2.76□□□□□ -1.97
MSH2P43246 Y_RNA.231-201ENST00000364358 102 ntBASIC2.76□□□□□ -1.97
MSH2P43246 Y_RNA.324-201ENST00000365165 102 ntBASIC2.76□□□□□ -1.97
MSH2P43246 Y_RNA.378-201ENST00000365652 113 ntBASIC2.76□□□□□ -1.97
MSH2P43246 RNU6-877P-201ENST00000383868 107 ntBASIC2.76□□□□□ -1.97
MSH2P43246 Z92545.1-201ENST00000411782 234 ntBASIC2.76□□□□□ -1.97
MSH2P43246 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.76□□□□□ -1.97
MSH2P43246 MICF-203ENST00000432679 129 ntBASIC2.76□□□□□ -1.97
MSH2P43246 MTATP6P13-201ENST00000438531 667 ntBASIC2.76□□□□□ -1.97
MSH2P43246 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
MSH2P43246 FGF7P6-202ENST00000451282 293 ntBASIC2.76□□□□□ -1.97
MSH2P43246 AL441985.1-201ENST00000457727 251 ntBASIC2.76□□□□□ -1.97
MSH2P43246 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.76□□□□□ -1.97
MSH2P43246 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
MSH2P43246 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.76□□□□□ -1.97
MSH2P43246 Y_RNA.687-201ENST00000516558 91 ntBASIC2.76□□□□□ -1.97
MSH2P43246 SNORA25.17-201ENST00000517184 124 ntBASIC2.76□□□□□ -1.97
MSH2P43246 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.76□□□□□ -1.97
MSH2P43246 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.76□□□□□ -1.97
MSH2P43246 Z82243.1-201ENST00000609432 473 ntBASIC2.76□□□□□ -1.97
MSH2P43246 RMST_3.1-201ENST00000611651 109 ntBASIC2.76□□□□□ -1.97
MSH2P43246 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.76□□□□□ -1.97
MSH2P43246 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.76□□□□□ -1.97
MSH2P43246 AL160394.1-201ENST00000624765 724 ntBASIC2.76□□□□□ -1.97
MSH2P43246 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.76□□□□□ -1.97
MSH2P43246 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
MSH2P43246 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
MSH2P43246 MIR6073-201ENST00000352083 89 ntBASIC2.75□□□□□ -1.97
MSH2P43246 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
MSH2P43246 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
MSH2P43246 RNA5SP219-201ENST00000390940 113 ntBASIC2.75□□□□□ -1.97
MSH2P43246 RAP1BP3-201ENST00000407180 549 ntBASIC2.75□□□□□ -1.97
MSH2P43246 POLHP1-201ENST00000411806 470 ntBASIC2.75□□□□□ -1.97
MSH2P43246 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.75□□□□□ -1.97
MSH2P43246 ARL5AP1-201ENST00000418991 388 ntBASIC2.75□□□□□ -1.97
MSH2P43246 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.75□□□□□ -1.97
MSH2P43246 TOMM20P4-201ENST00000427861 435 ntBASIC2.75□□□□□ -1.97
MSH2P43246 SRIP2-201ENST00000428470 166 ntBASIC2.75□□□□□ -1.97
MSH2P43246 RPL30P4-201ENST00000429309 333 ntBASIC2.75□□□□□ -1.97
MSH2P43246 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.75□□□□□ -1.97
MSH2P43246 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.75□□□□□ -1.97
MSH2P43246 ERLEC1P1-201ENST00000433806 578 ntBASIC2.75□□□□□ -1.97
MSH2P43246 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.75□□□□□ -1.97
MSH2P43246 AC004383.1-201ENST00000438135 289 ntBASIC2.75□□□□□ -1.97
MSH2P43246 CALM1P1-201ENST00000442082 433 ntBASIC2.75□□□□□ -1.97
MSH2P43246 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.75□□□□□ -1.97
MSH2P43246 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.75□□□□□ -1.97
MSH2P43246 S100A11P2-201ENST00000467589 312 ntBASIC2.75□□□□□ -1.97
MSH2P43246 RPS29P25-201ENST00000481709 171 ntBASIC2.75□□□□□ -1.97
MSH2P43246 Y_RNA.654-201ENST00000497848 106 ntBASIC2.75□□□□□ -1.97
MSH2P43246 AC079140.5-201ENST00000507882 310 ntBASIC2.75□□□□□ -1.97
MSH2P43246 RNU6-189P-201ENST00000516120 101 ntBASIC2.75□□□□□ -1.97
MSH2P43246 ACA59.2-201ENST00000517061 156 ntBASIC2.75□□□□□ -1.97
MSH2P43246 AC010186.2-204ENST00000537668 439 ntBASIC2.75□□□□□ -1.97
MSH2P43246 AC078814.3-201ENST00000553036 491 ntBASIC2.75□□□□□ -1.97
MSH2P43246 AC060766.3-201ENST00000591442 263 ntBASIC2.75□□□□□ -1.97
MSH2P43246 VN1R80P-201ENST00000597126 338 ntBASIC2.75□□□□□ -1.97
MSH2P43246 AL160281.1-201ENST00000605307 311 ntBASIC2.75□□□□□ -1.97
MSH2P43246 RNU6-89P-201ENST00000606519 100 ntBASIC2.75□□□□□ -1.97
MSH2P43246 AC002044.1-201ENST00000606707 158 ntBASIC2.75□□□□□ -1.97
MSH2P43246 AC104458.1-201ENST00000608243 463 ntBASIC2.75□□□□□ -1.97
MSH2P43246 AC092807.2-201ENST00000609367 243 ntBASIC2.75□□□□□ -1.97
MSH2P43246 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.75□□□□□ -1.97
MSH2P43246 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
MSH2P43246 AC011890.2-201ENST00000613393 294 ntBASIC2.75□□□□□ -1.97
MSH2P43246 SCARNA4-202ENST00000625402 129 ntBASIC2.75□□□□□ -1.97
MSH2P43246 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms