Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC007919.1-201ENST00000429380 217 ntBASIC0.31□□□□□ -2.36
CUX1P39880 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC0.31□□□□□ -2.36
CUX1P39880 AC244505.3-201ENST00000454598 187 ntBASIC0.31□□□□□ -2.36
CUX1P39880 AC010409.1-201ENST00000487382 476 ntBASIC0.31□□□□□ -2.36
CUX1P39880 AL163195.1-201ENST00000496941 348 ntBASIC0.31□□□□□ -2.36
CUX1P39880 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.31□□□□□ -2.36
CUX1P39880 CYCTP-201ENST00000504253 315 ntBASIC0.31□□□□□ -2.36
CUX1P39880 RNU6-197P-201ENST00000516680 100 ntBASIC0.31□□□□□ -2.36
CUX1P39880 RNU6-667P-201ENST00000517186 102 ntBASIC0.31□□□□□ -2.36
CUX1P39880 RNA5SP291-201ENST00000517222 105 ntBASIC0.31□□□□□ -2.36
CUX1P39880 AP003400.6-201ENST00000624698 740 ntBASIC0.31□□□□□ -2.36
CUX1P39880 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC0.31□□□□□ -2.36
CUX1P39880 RNU6-921P-201ENST00000384361 107 ntBASIC0.3□□□□□ -2.36
CUX1P39880 RNU2-15P-201ENST00000410692 191 ntBASIC0.3□□□□□ -2.36
CUX1P39880 RNU6-233P-201ENST00000410845 141 ntBASIC0.3□□□□□ -2.36
CUX1P39880 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.3□□□□□ -2.36
CUX1P39880 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.3□□□□□ -2.36
CUX1P39880 RSL24D1P8-201ENST00000434442 492 ntBASIC0.3□□□□□ -2.36
CUX1P39880 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC0.3□□□□□ -2.36
CUX1P39880 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.3□□□□□ -2.36
CUX1P39880 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.3□□□□□ -2.36
CUX1P39880 AC009033.1-201ENST00000624279 431 ntBASIC0.3□□□□□ -2.36
CUX1P39880 RNU6-30P-201ENST00000384561 107 ntBASIC0.29□□□□□ -2.36
CUX1P39880 RNU6-360P-201ENST00000390944 104 ntBASIC0.29□□□□□ -2.36
CUX1P39880 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.29□□□□□ -2.36
CUX1P39880 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC0.29□□□□□ -2.36
CUX1P39880 AC015724.1-201ENST00000478577 156 ntBASIC0.29□□□□□ -2.36
CUX1P39880 BET1P1-201ENST00000482276 359 ntBASIC0.29□□□□□ -2.36
CUX1P39880 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.29□□□□□ -2.36
CUX1P39880 AC022483.1-201ENST00000514020 567 ntBASIC0.29□□□□□ -2.36
CUX1P39880 RNVU1-2-201ENST00000516326 135 ntBASIC0.29□□□□□ -2.36
CUX1P39880 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.29□□□□□ -2.36
CUX1P39880 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.29□□□□□ -2.36
CUX1P39880 BNIP3P27-201ENST00000599991 412 ntBASIC0.29□□□□□ -2.36
CUX1P39880 AL713866.2-201ENST00000603579 219 ntBASIC0.29□□□□□ -2.36
CUX1P39880 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC0.29□□□□□ -2.36
CUX1P39880 AC017104.5-201ENST00000637647 639 ntBASIC0.29□□□□□ -2.36
CUX1P39880 MIR302D-201ENST00000362275 68 ntBASIC0.28□□□□□ -2.36
CUX1P39880 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.28□□□□□ -2.36
CUX1P39880 NDUFS5P4-201ENST00000412983 318 ntBASIC0.28□□□□□ -2.36
CUX1P39880 AC114482.1-201ENST00000418010 247 ntBASIC0.28□□□□□ -2.36
CUX1P39880 RPS26P5-201ENST00000418544 335 ntBASIC0.28□□□□□ -2.36
CUX1P39880 AC092634.6-201ENST00000418558 192 ntBASIC0.28□□□□□ -2.36
CUX1P39880 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.28□□□□□ -2.36
CUX1P39880 MTCO3P5-201ENST00000433620 714 ntBASIC0.28□□□□□ -2.36
CUX1P39880 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.28□□□□□ -2.36
CUX1P39880 MEMO1P3-201ENST00000459811 302 ntBASIC0.28□□□□□ -2.36
CUX1P39880 AC012213.3-201ENST00000577199 777 ntBASIC0.28□□□□□ -2.36
CUX1P39880 AC091152.3-201ENST00000604227 325 ntBASIC0.28□□□□□ -2.36
CUX1P39880 MZT1P2-201ENST00000604387 248 ntBASIC0.28□□□□□ -2.36
CUX1P39880 MTND1P37-201ENST00000636562 264 ntBASIC0.28□□□□□ -2.36
CUX1P39880 RNU6-923P-201ENST00000364753 107 ntBASIC0.28□□□□□ -2.37
CUX1P39880 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.28□□□□□ -2.37
CUX1P39880 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.28□□□□□ -2.37
CUX1P39880 EIF1P1-201ENST00000421436 341 ntBASIC0.28□□□□□ -2.37
CUX1P39880 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.28□□□□□ -2.37
CUX1P39880 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC0.28□□□□□ -2.37
CUX1P39880 SNORA14.1-201ENST00000516113 141 ntBASIC0.28□□□□□ -2.37
CUX1P39880 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC0.28□□□□□ -2.37
CUX1P39880 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.28□□□□□ -2.37
CUX1P39880 AC108676.2-201ENST00000605225 163 ntBASIC0.28□□□□□ -2.37
CUX1P39880 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.28□□□□□ -2.37
CUX1P39880 RNU6-386P-201ENST00000362650 107 ntBASIC0.27□□□□□ -2.37
CUX1P39880 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC0.27□□□□□ -2.37
CUX1P39880 SNORA48.1-201ENST00000390879 135 ntBASIC0.27□□□□□ -2.37
CUX1P39880 AL109755.1-201ENST00000401791 649 ntBASIC0.27□□□□□ -2.37
CUX1P39880 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.27□□□□□ -2.37
CUX1P39880 AL353706.1-201ENST00000436728 494 ntBASIC0.27□□□□□ -2.37
CUX1P39880 AC068135.1-201ENST00000446164 246 ntBASIC0.27□□□□□ -2.37
CUX1P39880 AC013267.1-201ENST00000458227 267 ntBASIC0.27□□□□□ -2.37
CUX1P39880 AC117525.1-201ENST00000515228 503 ntBASIC0.27□□□□□ -2.37
CUX1P39880 AC090142.3-201ENST00000519012 385 ntBASIC0.27□□□□□ -2.37
CUX1P39880 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.27□□□□□ -2.37
CUX1P39880 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC0.27□□□□□ -2.37
CUX1P39880 SUMO2P14-201ENST00000604488 293 ntBASIC0.27□□□□□ -2.37
CUX1P39880 MTRNR2L2-201ENST00000604882 87 ntBASIC0.27□□□□□ -2.37
CUX1P39880 AL109620.1-201ENST00000618738 1197 ntBASIC0.27□□□□□ -2.37
CUX1P39880 SNORD14D-201ENST00000384390 87 ntBASIC0.26□□□□□ -2.37
CUX1P39880 RNU6-700P-201ENST00000391043 107 ntBASIC0.26□□□□□ -2.37
CUX1P39880 RNU2-48P-201ENST00000410694 191 ntBASIC0.26□□□□□ -2.37
CUX1P39880 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0.26□□□□□ -2.37
CUX1P39880 AL358794.1-201ENST00000445689 381 ntBASIC0.26□□□□□ -2.37
CUX1P39880 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
CUX1P39880 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC0.26□□□□□ -2.37
CUX1P39880 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
CUX1P39880 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
CUX1P39880 MIR4493-201ENST00000584016 73 ntBASIC0.26□□□□□ -2.37
CUX1P39880 AL671309.1-201ENST00000603750 544 ntBASIC0.26□□□□□ -2.37
CUX1P39880 RPL21P136-201ENST00000605378 396 ntBASIC0.26□□□□□ -2.37
CUX1P39880 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.26□□□□□ -2.37
CUX1P39880 RNA5SP98-201ENST00000363158 137 ntBASIC0.25□□□□□ -2.37
CUX1P39880 Y_RNA.185-201ENST00000363894 100 ntBASIC0.25□□□□□ -2.37
CUX1P39880 RNU6-39P-201ENST00000384344 107 ntBASIC0.25□□□□□ -2.37
CUX1P39880 RNU6-348P-201ENST00000384386 107 ntBASIC0.25□□□□□ -2.37
CUX1P39880 Y_RNA.488-201ENST00000384403 102 ntBASIC0.25□□□□□ -2.37
CUX1P39880 RPS3AP36-201ENST00000398190 775 ntBASIC0.25□□□□□ -2.37
CUX1P39880 MIR1302-8-201ENST00000408342 128 ntBASIC0.25□□□□□ -2.37
CUX1P39880 AC127391.1-201ENST00000411737 98 ntBASIC0.25□□□□□ -2.37
CUX1P39880 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.25□□□□□ -2.37
CUX1P39880 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms