Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC2.78□□□□□ -1.96
HOXD3P31249 AC092628.2-201ENST00000622492 339 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 AC097372.5-201ENST00000623665 376 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 U4.7-201ENST00000638126 106 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC2.78□□□□□ -1.96
HOXD3P31249 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
HOXD3P31249 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC2.78□□□□□ -1.97
HOXD3P31249 AL365361.1-201ENST00000566942 3481 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 HSPA8P1-201ENST00000425843 1833 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HOXD3P31249 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HOXD3P31249 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
HOXD3P31249 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HOXD3P31249 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXD3P31249 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXD3P31249 RNU6-78P-201ENST00000362897 107 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 RNU6-942P-201ENST00000363002 107 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 U3.6-201ENST00000363622 211 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 RNU6-99P-201ENST00000364721 107 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 RNU6-336P-201ENST00000364891 107 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 Y_RNA.533-201ENST00000384596 114 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 SNORA41-201ENST00000384675 132 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 SNORA48.8-201ENST00000391324 134 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 HMGN2P8-201ENST00000391458 268 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 NDUFB4P4-201ENST00000404822 243 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 SNORA11.2-201ENST00000408318 127 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 HMGN2P30-201ENST00000423237 256 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.77□□□□□ -1.97
HOXD3P31249 RPS15AP10-201ENST00000432472 382 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC2.77□□□□□ -1.97
HOXD3P31249 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD3P31249 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.77□□□□□ -1.97
HOXD3P31249 RPS27AP10-201ENST00000496103 208 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD3P31249 MTND4LP22-201ENST00000508209 276 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 ACA59.1-201ENST00000515966 143 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 RN7SKP83-201ENST00000516512 178 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 SNORA70.18-201ENST00000516696 98 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 RNU6-264P-201ENST00000517134 104 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD3P31249 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXD3P31249 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.77□□□□□ -1.97
HOXD3P31249 AL158827.2-201ENST00000602494 330 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 AP000787.2-201ENST00000604432 568 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 AC005000.2-201ENST00000605468 310 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXD3P31249 AC005014.2-201ENST00000607795 599 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 AC091925.1-201ENST00000623204 462 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 MIR3651-201ENST00000630427 90 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 AL691447.3-201ENST00000635020 330 ntBASIC2.77□□□□□ -1.97
HOXD3P31249 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXD3P31249 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXD3P31249 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HOXD3P31249 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXD3P31249 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXD3P31249 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
HOXD3P31249 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXD3P31249 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC2.77□□□□□ -1.97
HOXD3P31249 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD3P31249 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXD3P31249 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
HOXD3P31249 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
HOXD3P31249 Y_RNA.145-201ENST00000363527 102 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 RNU6-596P-201ENST00000365395 98 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 RNU6-1032P-201ENST00000384100 107 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 Y_RNA.459-201ENST00000384251 102 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 RNU6-1106P-201ENST00000390845 107 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 RPS4XP3-201ENST00000398541 413 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXD3P31249 MIR888-201ENST00000401186 77 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 MRPL42P3-201ENST00000401492 326 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 U3.37-201ENST00000408528 213 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 RPL21P40-201ENST00000428586 483 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXD3P31249 AC011816.1-201ENST00000441346 546 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 DAP3P1-201ENST00000441522 278 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 BTF3P15-201ENST00000455606 336 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 AC133134.1-201ENST00000466800 359 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 RPL23AP14-201ENST00000468281 468 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 RN7SL601P-201ENST00000471221 293 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 AC084357.1-201ENST00000473404 255 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 AC025518.1-201ENST00000479856 347 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 AC105758.1-201ENST00000506038 399 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC2.76□□□□□ -1.97
HOXD3P31249 SNORA31.1-201ENST00000515993 133 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 SNORA31.5-201ENST00000516190 133 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 RNU6-581P-201ENST00000516214 105 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 RNU6-612P-201ENST00000516909 102 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 RN7SKP57-201ENST00000517248 293 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 AP005902.1-201ENST00000521358 186 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 AC005476.1-201ENST00000554427 397 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXD3P31249 MIR3186-201ENST00000577404 85 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 MIR4680-201ENST00000580906 66 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 AC005899.2-201ENST00000584353 90 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 AC011471.1-201ENST00000585766 187 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 AL451007.1-201ENST00000595491 289 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 KLKP1-201ENST00000595979 403 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 AC006077.1-201ENST00000604746 343 ntBASIC2.76□□□□□ -1.97
HOXD3P31249 MIR7851-201ENST00000610611 160 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms