Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNU6-8-201ENST00000365467 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SMARCA1P28370 Z98749.2-208ENST00000381646 500 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-25P-201ENST00000383873 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-1-201ENST00000383898 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-48P-201ENST00000384161 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-36P-201ENST00000384172 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-4P-201ENST00000384205 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-5P-201ENST00000384238 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 SNORA54-201ENST00000384281 123 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-3P-201ENST00000384314 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-16P-201ENST00000384385 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-15P-201ENST00000384534 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-2-201ENST00000384627 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-29P-201ENST00000384637 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-9-201ENST00000384776 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-33P-201ENST00000384793 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.57□□□□□ -1.84
SMARCA1P28370 AL714022.1-201ENST00000439897 151 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.57□□□□□ -1.84
SMARCA1P28370 S100A11P2-201ENST00000467589 312 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 AC026801.1-201ENST00000497178 464 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.57□□□□□ -1.84
SMARCA1P28370 AC008885.1-201ENST00000514930 301 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-1183P-201ENST00000517054 60 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.57□□□□□ -1.84
SMARCA1P28370 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.57□□□□□ -1.84
SMARCA1P28370 MIR4325-201ENST00000583049 90 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 RNU6-6P-201ENST00000606623 107 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 AL627309.6-201ENST00000606857 840 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 AL161629.2-201ENST00000615347 275 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 U6.99-201ENST00000637524 83 ntBASIC3.57□□□□□ -1.84
SMARCA1P28370 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
SMARCA1P28370 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
SMARCA1P28370 RNU1-73P-201ENST00000383971 164 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 Y_RNA.431-201ENST00000384086 102 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 Y_RNA.482-201ENST00000384377 111 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 MIR888-201ENST00000401186 77 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 AL356057.2-201ENST00000403318 432 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 RNU6-370P-201ENST00000411008 104 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 AL096701.2-201ENST00000416920 238 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 SAR1AP4-201ENST00000429225 591 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 AC236972.2-201ENST00000434979 310 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 CYCSP32-201ENST00000440548 321 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.56□□□□□ -1.84
SMARCA1P28370 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.56□□□□□ -1.84
SMARCA1P28370 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
SMARCA1P28370 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.56□□□□□ -1.84
SMARCA1P28370 ANP32BP3-201ENST00000559213 706 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.56□□□□□ -1.84
SMARCA1P28370 AL645944.1-201ENST00000603857 493 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 MIR6128-201ENST00000615528 109 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 AC084781.2-201ENST00000615568 161 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 AC126177.8-201ENST00000618339 1015 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
SMARCA1P28370 Z69720.2-201ENST00000624755 279 ntBASIC3.56□□□□□ -1.84
SMARCA1P28370 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
SMARCA1P28370 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SMARCA1P28370 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SMARCA1P28370 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
SMARCA1P28370 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.55□□□□□ -1.84
SMARCA1P28370 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
SMARCA1P28370 RNY4P36-201ENST00000391116 96 ntBASIC3.55□□□□□ -1.84
SMARCA1P28370 AL354751.2-201ENST00000415471 210 ntBASIC3.55□□□□□ -1.84
SMARCA1P28370 AL353729.1-201ENST00000425044 720 ntBASIC3.55□□□□□ -1.84
SMARCA1P28370 UBE2V1P4-201ENST00000425374 344 ntBASIC3.55□□□□□ -1.84
SMARCA1P28370 AL645568.3-201ENST00000433683 316 ntBASIC3.55□□□□□ -1.84
SMARCA1P28370 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.55□□□□□ -1.84
SMARCA1P28370 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.55□□□□□ -1.84
SMARCA1P28370 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.55□□□□□ -1.84
SMARCA1P28370 snoU109.2-201ENST00000459316 135 ntBASIC3.55□□□□□ -1.84
SMARCA1P28370 RPS29P20-201ENST00000489592 171 ntBASIC3.55□□□□□ -1.84
SMARCA1P28370 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SMARCA1P28370 AP002404.1-201ENST00000532005 451 ntBASIC3.55□□□□□ -1.84
SMARCA1P28370 DNAJC8P1-201ENST00000554535 372 ntBASIC3.55□□□□□ -1.84
SMARCA1P28370 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.55□□□□□ -1.84
SMARCA1P28370 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.55□□□□□ -1.84
SMARCA1P28370 AC010378.1-201ENST00000619270 362 ntBASIC3.55□□□□□ -1.84
SMARCA1P28370 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
SMARCA1P28370 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
SMARCA1P28370 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.55□□□□□ -1.84
SMARCA1P28370 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SMARCA1P28370 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SMARCA1P28370 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.54□□□□□ -1.84
SMARCA1P28370 MIR422A-201ENST00000362286 90 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 RNU6-601P-201ENST00000384540 107 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 RNU6-658P-201ENST00000384606 106 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 Y_RNA.579-201ENST00000390939 94 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 AL445529.1-201ENST00000398713 389 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 SNORD56-201ENST00000413522 71 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.54□□□□□ -1.84
SMARCA1P28370 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.54□□□□□ -1.84
SMARCA1P28370 MTATP6P7-201ENST00000453315 681 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.54□□□□□ -1.84
SMARCA1P28370 RNU7-187P-201ENST00000458985 68 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 RPL23AP45-201ENST00000476406 468 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SMARCA1P28370 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.54□□□□□ -1.84
SMARCA1P28370 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.54□□□□□ -1.84
SMARCA1P28370 AC005000.2-201ENST00000605468 310 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 146 ms