Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 C1DP5-201ENST00000525775 383 ntBASIC0.12□□□□□ -2.39
CCDC88BA6NC98 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.12□□□□□ -2.39
CCDC88BA6NC98 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC0.12□□□□□ -2.39
CCDC88BA6NC98 BNIP3P27-201ENST00000599991 412 ntBASIC0.12□□□□□ -2.39
CCDC88BA6NC98 AC096720.1-201ENST00000604441 183 ntBASIC0.12□□□□□ -2.39
CCDC88BA6NC98 AP000860.1-201ENST00000605250 559 ntBASIC0.12□□□□□ -2.39
CCDC88BA6NC98 AL357075.2-201ENST00000614906 189 ntBASIC0.12□□□□□ -2.39
CCDC88BA6NC98 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.11□□□□□ -2.39
CCDC88BA6NC98 RPL26P6-201ENST00000440913 438 ntBASIC0.11□□□□□ -2.39
CCDC88BA6NC98 MTND2P24-201ENST00000453434 806 ntBASIC0.11□□□□□ -2.39
CCDC88BA6NC98 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC0.11□□□□□ -2.39
CCDC88BA6NC98 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.11□□□□□ -2.39
CCDC88BA6NC98 RN7SKP88-201ENST00000516847 250 ntBASIC0.11□□□□□ -2.39
CCDC88BA6NC98 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.11□□□□□ -2.39
CCDC88BA6NC98 AC124947.2-202ENST00000552735 133 ntBASIC0.11□□□□□ -2.39
CCDC88BA6NC98 AC022432.1-201ENST00000595739 310 ntBASIC0.11□□□□□ -2.39
CCDC88BA6NC98 7SK.8-201ENST00000612110 250 ntBASIC0.11□□□□□ -2.39
CCDC88BA6NC98 7SK.11-201ENST00000615477 250 ntBASIC0.11□□□□□ -2.39
CCDC88BA6NC98 7SK.13-201ENST00000622040 250 ntBASIC0.11□□□□□ -2.39
CCDC88BA6NC98 RNU6-349P-201ENST00000362402 107 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.1□□□□□ -2.39
CCDC88BA6NC98 AL049874.1-201ENST00000489560 388 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 RNU6-488P-201ENST00000515918 99 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 SNORA70.22-201ENST00000517160 124 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC0.1□□□□□ -2.39
CCDC88BA6NC98 ARL2BPP5-201ENST00000523141 481 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC0.1□□□□□ -2.39
CCDC88BA6NC98 AC091489.2-201ENST00000566263 604 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 MIR3167-201ENST00000579623 85 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC0.1□□□□□ -2.39
CCDC88BA6NC98 MIR411-201ENST00000362239 96 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 SNORD82-201ENST00000365530 70 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 MIR19B1-201ENST00000384829 87 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 RPS3AP1-201ENST00000413190 320 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 MTCYBP32-201ENST00000427945 1084 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC0.1□□□□□ -2.39
CCDC88BA6NC98 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.1□□□□□ -2.39
CCDC88BA6NC98 MEMO1P3-201ENST00000459811 302 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 AP001324.2-201ENST00000461163 319 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 VPS26AP1-201ENST00000483197 979 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 RNU5A-7P-201ENST00000515979 116 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 RNU6-202P-201ENST00000515998 96 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.1□□□□□ -2.39
CCDC88BA6NC98 AC021851.1-201ENST00000608537 1082 ntBASIC0.1□□□□□ -2.39
CCDC88BA6NC98 MIR888-201ENST00000401186 77 ntBASIC0.09□□□□□ -2.4
CCDC88BA6NC98 RNU2-47P-201ENST00000410649 186 ntBASIC0.09□□□□□ -2.4
CCDC88BA6NC98 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.09□□□□□ -2.4
CCDC88BA6NC98 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.09□□□□□ -2.4
CCDC88BA6NC98 AC006001.4-201ENST00000622243 395 ntBASIC0.09□□□□□ -2.4
CCDC88BA6NC98 Y_RNA.136-201ENST00000363444 102 ntBASIC0.08□□□□□ -2.4
CCDC88BA6NC98 RNU6-923P-201ENST00000364753 107 ntBASIC0.08□□□□□ -2.4
CCDC88BA6NC98 AC092423.1-201ENST00000430165 186 ntBASIC0.08□□□□□ -2.4
CCDC88BA6NC98 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC0.08□□□□□ -2.4
CCDC88BA6NC98 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.08□□□□□ -2.4
CCDC88BA6NC98 GAPDHP17-201ENST00000449858 1001 ntBASIC0.08□□□□□ -2.4
CCDC88BA6NC98 RPL7P43-201ENST00000478876 753 ntBASIC0.08□□□□□ -2.4
CCDC88BA6NC98 AC112206.3-201ENST00000514578 389 ntBASIC0.08□□□□□ -2.4
CCDC88BA6NC98 IGLVI-20-201ENST00000519296 130 ntBASIC0.08□□□□□ -2.4
CCDC88BA6NC98 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
CCDC88BA6NC98 AL512310.8-201ENST00000550183 120 ntBASIC0.08□□□□□ -2.4
CCDC88BA6NC98 AC025423.5-201ENST00000550230 219 ntBASIC0.08□□□□□ -2.4
CCDC88BA6NC98 AL022067.1-201ENST00000602426 454 ntBASIC0.08□□□□□ -2.4
CCDC88BA6NC98 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.08□□□□□ -2.4
CCDC88BA6NC98 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.08□□□□□ -2.4
CCDC88BA6NC98 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.08□□□□□ -2.4
CCDC88BA6NC98 AC090625.1-201ENST00000357130 210 ntBASIC0.07□□□□□ -2.4
CCDC88BA6NC98 RNA5SP368-201ENST00000364298 116 ntBASIC0.07□□□□□ -2.4
CCDC88BA6NC98 SNORA48.1-201ENST00000390879 135 ntBASIC0.07□□□□□ -2.4
CCDC88BA6NC98 Z82210.1-201ENST00000440037 231 ntBASIC0.07□□□□□ -2.4
CCDC88BA6NC98 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.07□□□□□ -2.4
CCDC88BA6NC98 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.07□□□□□ -2.4
CCDC88BA6NC98 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC0.07□□□□□ -2.4
CCDC88BA6NC98 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC0.07□□□□□ -2.4
CCDC88BA6NC98 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.07□□□□□ -2.4
CCDC88BA6NC98 AC106858.1-201ENST00000637497 429 ntBASIC0.07□□□□□ -2.4
CCDC88BA6NC98 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.07□□□□□ -2.4
CCDC88BA6NC98 RNY4P3-201ENST00000365254 95 ntBASIC0.06□□□□□ -2.4
CCDC88BA6NC98 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC0.06□□□□□ -2.4
CCDC88BA6NC98 HSPE1P9-201ENST00000440046 311 ntBASIC0.06□□□□□ -2.4
CCDC88BA6NC98 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC0.06□□□□□ -2.4
CCDC88BA6NC98 AC113420.1-201ENST00000507903 571 ntBASIC0.06□□□□□ -2.4
CCDC88BA6NC98 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.06□□□□□ -2.4
CCDC88BA6NC98 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC0.06□□□□□ -2.4
CCDC88BA6NC98 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.06□□□□□ -2.4
CCDC88BA6NC98 AL158163.2-201ENST00000619110 700 ntBASIC0.06□□□□□ -2.4
CCDC88BA6NC98 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.06□□□□□ -2.4
CCDC88BA6NC98 MIR135A2-201ENST00000384854 100 ntBASIC0.05□□□□□ -2.4
CCDC88BA6NC98 MIR1295A-201ENST00000408463 79 ntBASIC0.05□□□□□ -2.4
CCDC88BA6NC98 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0.05□□□□□ -2.4
CCDC88BA6NC98 AC007919.1-201ENST00000429380 217 ntBASIC0.05□□□□□ -2.4
CCDC88BA6NC98 MTCO3P5-201ENST00000433620 714 ntBASIC0.05□□□□□ -2.4
CCDC88BA6NC98 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC0.05□□□□□ -2.4
CCDC88BA6NC98 GTF2IP13-201ENST00000438487 386 ntBASIC0.05□□□□□ -2.4
CCDC88BA6NC98 RPL26P26-201ENST00000480251 434 ntBASIC0.05□□□□□ -2.4
CCDC88BA6NC98 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.05□□□□□ -2.4
CCDC88BA6NC98 AC023158.1-201ENST00000561632 1025 ntBASIC0.05□□□□□ -2.4
CCDC88BA6NC98 AC012213.3-201ENST00000577199 777 ntBASIC0.05□□□□□ -2.4
CCDC88BA6NC98 NDUFA8P1-201ENST00000605525 367 ntBASIC0.05□□□□□ -2.4
CCDC88BA6NC98 RNU6-945P-201ENST00000383947 107 ntBASIC0.04□□□□□ -2.4
CCDC88BA6NC98 AL590556.1-201ENST00000423231 483 ntBASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms