Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim47Q8C0E3 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim47Q8C0E3 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Trim47Q8C0E3 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim47Q8C0E3 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim47Q8C0E3 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Trim47Q8C0E3 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim47Q8C0E3 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim47Q8C0E3 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC17.89■□□□□ 0.45
Trim47Q8C0E3 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim47Q8C0E3 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim47Q8C0E3 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim47Q8C0E3 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim47Q8C0E3 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Haglr-201ENSMUST00000100000 2085 ntBASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trim47Q8C0E3 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim47Q8C0E3 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim47Q8C0E3 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim47Q8C0E3 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
Trim47Q8C0E3 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim47Q8C0E3 Gm5864-201ENSMUST00000202263 970 ntBASIC17.87■□□□□ 0.45
Trim47Q8C0E3 Gm7506-201ENSMUST00000207758 815 ntBASIC17.87■□□□□ 0.45
Trim47Q8C0E3 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.87■□□□□ 0.45
Trim47Q8C0E3 Gm7461-201ENSMUST00000058918 827 ntBASIC17.87■□□□□ 0.45
Trim47Q8C0E3 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim47Q8C0E3 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim47Q8C0E3 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim47Q8C0E3 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trim47Q8C0E3 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim47Q8C0E3 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.87■□□□□ 0.45
Trim47Q8C0E3 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
Trim47Q8C0E3 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 AC115863.1-201ENSMUST00000214815 1813 ntBASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim47Q8C0E3 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms