Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Gm11620-201ENSMUST00000118770 1845 ntBASIC13.96□□□□□ -0.17
Nkx3-1P97436 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC13.96□□□□□ -0.17
Nkx3-1P97436 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Nkx3-1P97436 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Nkx3-1P97436 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Gm15173-201ENSMUST00000122049 433 ntBASIC13.95□□□□□ -0.18
Nkx3-1P97436 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC13.95□□□□□ -0.18
Nkx3-1P97436 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Gm43073-201ENSMUST00000198200 1189 ntBASIC13.95□□□□□ -0.18
Nkx3-1P97436 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Gm15743-202ENSMUST00000182690 1901 ntBASIC13.95□□□□□ -0.18
Nkx3-1P97436 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Nkx3-1P97436 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Nkx3-1P97436 AC154527.4-201ENSMUST00000224364 1667 ntBASIC13.95□□□□□ -0.18
Nkx3-1P97436 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC13.94□□□□□ -0.18
Nkx3-1P97436 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC13.94□□□□□ -0.18
Nkx3-1P97436 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Gm7230-201ENSMUST00000173026 815 ntBASIC13.94□□□□□ -0.18
Nkx3-1P97436 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC13.94□□□□□ -0.18
Nkx3-1P97436 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Nkx3-1P97436 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Gm11594-201ENSMUST00000122313 162 ntBASIC13.93□□□□□ -0.18
Nkx3-1P97436 Gm12497-201ENSMUST00000138778 237 ntBASIC13.93□□□□□ -0.18
Nkx3-1P97436 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Gm37584-201ENSMUST00000193595 1290 ntBASIC13.93□□□□□ -0.18
Nkx3-1P97436 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC13.93□□□□□ -0.18
Nkx3-1P97436 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Nkx3-1P97436 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Gm4459-201ENSMUST00000118750 468 ntBASIC13.92□□□□□ -0.18
Nkx3-1P97436 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Gm43332-201ENSMUST00000202511 1044 ntBASIC13.92□□□□□ -0.18
Nkx3-1P97436 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms