Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Cdx1P18111 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Cdx1P18111 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Cdx1P18111 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC13.09□□□□□ -0.31
Cdx1P18111 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Mir5122-201ENSMUST00000175004 89 ntBASIC13.09□□□□□ -0.31
Cdx1P18111 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Cdx1P18111 Gm8309-201ENSMUST00000206627 1448 ntBASIC13.09□□□□□ -0.31
Cdx1P18111 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Zfp783-201ENSMUST00000095946 670 ntBASIC13.09□□□□□ -0.31
Cdx1P18111 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC13.09□□□□□ -0.31
Cdx1P18111 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC13.09□□□□□ -0.31
Cdx1P18111 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
Cdx1P18111 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdx1P18111 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Cdx1P18111 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Cdx1P18111 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
Cdx1P18111 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Cdx1P18111 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Cdx1P18111 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Cdx1P18111 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC13.08□□□□□ -0.32
Cdx1P18111 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Cdx1P18111 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC13.08□□□□□ -0.32
Cdx1P18111 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Cdx1P18111 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC13.08□□□□□ -0.32
Cdx1P18111 Gm10138-203ENSMUST00000206952 366 ntBASIC13.08□□□□□ -0.32
Cdx1P18111 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Cdx1P18111 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx1P18111 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
Cdx1P18111 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC13.07□□□□□ -0.32
Cdx1P18111 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC13.07□□□□□ -0.32
Cdx1P18111 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC13.07□□□□□ -0.32
Cdx1P18111 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Cdx1P18111 AC121577.1-201ENSMUST00000227302 707 ntBASIC13.07□□□□□ -0.32
Cdx1P18111 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
Cdx1P18111 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Cdx1P18111 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms