Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC13.45□□□□□ -0.26
Hmgb3O54879 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC13.45□□□□□ -0.26
Hmgb3O54879 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC13.45□□□□□ -0.26
Hmgb3O54879 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Hmgb3O54879 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC13.45□□□□□ -0.26
Hmgb3O54879 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Hmgb3O54879 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC13.45□□□□□ -0.26
Hmgb3O54879 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Hmgb3O54879 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Hmgb3O54879 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
Hmgb3O54879 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Hmgb3O54879 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC13.45□□□□□ -0.26
Hmgb3O54879 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Hmgb3O54879 Mir6349-201ENSMUST00000184059 97 ntBASIC13.44□□□□□ -0.26
Hmgb3O54879 Gm42555-201ENSMUST00000199304 1039 ntBASIC13.44□□□□□ -0.26
Hmgb3O54879 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC13.44□□□□□ -0.26
Hmgb3O54879 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC13.44□□□□□ -0.26
Hmgb3O54879 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC13.44□□□□□ -0.26
Hmgb3O54879 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Hmgb3O54879 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Hmgb3O54879 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Hmgb3O54879 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Hmgb3O54879 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Gm7290-201ENSMUST00000104990 617 ntBASIC13.43□□□□□ -0.26
Hmgb3O54879 Gm12918-201ENSMUST00000120234 636 ntBASIC13.43□□□□□ -0.26
Hmgb3O54879 Gm15710-201ENSMUST00000121821 636 ntBASIC13.43□□□□□ -0.26
Hmgb3O54879 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Gm5075-201ENSMUST00000196916 622 ntBASIC13.43□□□□□ -0.26
Hmgb3O54879 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC13.43□□□□□ -0.26
Hmgb3O54879 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC13.43□□□□□ -0.26
Hmgb3O54879 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC13.43□□□□□ -0.26
Hmgb3O54879 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
Hmgb3O54879 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb3O54879 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC13.43□□□□□ -0.26
Hmgb3O54879 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Hmgb3O54879 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC13.42□□□□□ -0.26
Hmgb3O54879 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
Hmgb3O54879 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
Hmgb3O54879 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC13.42□□□□□ -0.26
Hmgb3O54879 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms