Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Cx3cl1O35188 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cx3cl1O35188 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cx3cl1O35188 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cx3cl1O35188 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC15.19■□□□□ 0.02
Cx3cl1O35188 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Gm44430-201ENSMUST00000203376 995 ntBASIC15.19■□□□□ 0.02
Cx3cl1O35188 Otx2os1-206ENSMUST00000228153 787 ntBASIC15.19■□□□□ 0.02
Cx3cl1O35188 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Cx3cl1O35188 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cx3cl1O35188 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Cx3cl1O35188 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC15.18■□□□□ 0.02
Cx3cl1O35188 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cx3cl1O35188 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.18■□□□□ 0.02
Cx3cl1O35188 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Gm20628-201ENSMUST00000177363 3215 ntBASIC15.18■□□□□ 0.02
Cx3cl1O35188 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Cx3cl1O35188 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC15.18■□□□□ 0.02
Cx3cl1O35188 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Cx3cl1O35188 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cx3cl1O35188 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Cx3cl1O35188 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cx3cl1O35188 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Ank2-226ENSMUST00000189368 339 ntBASIC15.16■□□□□ 0.02
Cx3cl1O35188 Gm36967-201ENSMUST00000193814 266 ntBASIC15.16■□□□□ 0.02
Cx3cl1O35188 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cx3cl1O35188 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms