Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AC034229.5-201ENST00000624258 185 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 AC004925.1-201ENST00000624256 2706 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 MIR448-201ENST00000362131 111 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 MIR411-201ENST00000362239 96 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 RNU6-78P-201ENST00000362897 107 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 RNA5SP97-201ENST00000365006 84 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 RNU6-926P-201ENST00000384075 107 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 RNU6-662P-201ENST00000384253 104 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 RNU6-125P-201ENST00000384505 107 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 MIR1251-201ENST00000408552 70 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 SNORD108-201ENST00000459332 71 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 RPL7P49-201ENST00000471402 708 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 RPS26P21-201ENST00000475397 348 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 HMGB1P22-201ENST00000505315 124 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 SNORA31.18-201ENST00000517043 134 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 AC090617.3-201ENST00000573670 475 ntBASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.93□□□□□ -1.62
CHMP3Q9Y3E7 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 AC068254.2-201ENST00000623938 3577 ntBASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 SNORD78.2-201ENST00000391076 69 ntBASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 RNU6ATAC-201ENST00000408749 126 ntBASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 NDUFB4P7-201ENST00000423198 363 ntBASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 AC006499.6-201ENST00000511169 607 ntBASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 AC010265.1-201ENST00000513509 211 ntBASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 AC087441.2-201ENST00000529141 262 ntBASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 AC004825.2-201ENST00000616634 455 ntBASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 AL591424.2-201ENST00000617023 128 ntBASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CHMP3Q9Y3E7 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AL160275.2-201ENST00000412010 394 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AC004552.1-201ENST00000419089 348 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AC007389.2-201ENST00000434630 306 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AC069285.2-201ENST00000440210 275 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AC010469.1-201ENST00000463864 576 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 RPS26P3-201ENST00000470205 348 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AC090543.2-201ENST00000483963 348 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AC004057.1-201ENST00000485827 348 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AC074198.2-201ENST00000508153 258 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 MIR2355-201ENST00000517199 87 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AP002392.1-201ENST00000537692 208 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AC006133.1-201ENST00000617106 264 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AC097372.5-201ENST00000623665 376 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AC007785.2-201ENST00000598627 1916 ntBASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
CHMP3Q9Y3E7 AC018529.3-201ENST00000624212 2254 ntBASIC4.9□□□□□ -1.62
CHMP3Q9Y3E7 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.9□□□□□ -1.62
CHMP3Q9Y3E7 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.9□□□□□ -1.62
CHMP3Q9Y3E7 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
CHMP3Q9Y3E7 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
CHMP3Q9Y3E7 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.9□□□□□ -1.62
CHMP3Q9Y3E7 RNU6-682P-201ENST00000363843 106 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 SNORD74.4-201ENST00000364129 80 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-335P-201ENST00000364563 113 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-290P-201ENST00000365212 101 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 Y_RNA.506-201ENST00000384494 102 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 MIR93-201ENST00000385024 80 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 COX6CP10-201ENST00000416832 224 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 AL445305.1-201ENST00000432577 575 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 snoU13.30-201ENST00000458951 104 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 RNU7-120P-201ENST00000459334 63 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 RPL21P129-201ENST00000491732 478 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 AC025554.1-201ENST00000505641 188 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 AKIRIN2P1-201ENST00000505898 352 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 Y_RNA.683-201ENST00000516508 93 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 Y_RNA.703-201ENST00000516846 111 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-1212P-201ENST00000517023 104 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms