Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNU6-15P-201ENST00000384534 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-2-201ENST00000384627 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-29P-201ENST00000384637 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-9-201ENST00000384776 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-33P-201ENST00000384793 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU4-47P-201ENST00000410876 114 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 SNORD56-201ENST00000413522 71 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 AL590632.1-201ENST00000424289 371 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RPL26P9-201ENST00000457466 433 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-1037P-201ENST00000459571 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-1170P-201ENST00000515974 106 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 Y_RNA.718-201ENST00000517110 102 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 UBL5P2-201ENST00000583788 219 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-6P-201ENST00000606623 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 AC133104.2-201ENST00000615272 193 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 MIR6128-201ENST00000615528 109 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 AC006111.3-201ENST00000622137 383 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-72P-201ENST00000384285 79 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 MIR449B-201ENST00000384995 97 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 SNORD67-201ENST00000390833 111 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 U3.37-201ENST00000408528 213 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 RNU4-14P-201ENST00000410858 122 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-370P-201ENST00000411008 104 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 AC016831.2-201ENST00000417179 352 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 RPS15AP10-201ENST00000432472 382 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 SSXP4-201ENST00000451349 245 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 BTF3P15-201ENST00000455606 336 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 RN7SL633P-201ENST00000488974 297 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 AL442663.2-201ENST00000554385 511 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 AC123912.5-201ENST00000605470 343 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 AL133215.3-201ENST00000609801 448 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 MIR7975-201ENST00000619350 68 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 AC098657.3-201ENST00000620434 263 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 AL359757.2-201ENST00000624309 274 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 MAPK10-362ENST00000641864 4484 ntBASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.6□□□□□ -1.83
LIMCH1Q9UPQ0 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 AC073325.2-201ENST00000339545 159 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 RNY4P36-201ENST00000391116 96 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 MIR1302-11-201ENST00000408051 138 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 MIR1302-9-201ENST00000408365 138 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 MIR1302-10-201ENST00000408734 138 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 HIGD1AP11-201ENST00000438361 280 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 AC009969.1-201ENST00000438726 172 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 HIGD1AP2-201ENST00000446367 280 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 RPL23AP45-201ENST00000476406 468 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 RN7SL283P-201ENST00000489055 303 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 APOOP3-201ENST00000536787 586 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 CYP2C61P-201ENST00000604072 290 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 AL160281.1-201ENST00000605307 311 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 MIR1302-2-201ENST00000607096 138 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 AC064836.2-201ENST00000609491 462 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 AL161423.1-201ENST00000613700 262 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 AL161629.2-201ENST00000615347 275 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 AC084781.2-201ENST00000615568 161 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 MTND4LP32-201ENST00000636111 270 ntBASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
LIMCH1Q9UPQ0 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 AC008264.2-201ENST00000610193 3731 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 RNU6-1188P-201ENST00000363795 107 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 RNU5E-7P-201ENST00000365290 117 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 SNORD73A-201ENST00000386062 65 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms