Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 RNU6-593P-201ENST00000364716 112 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 FAT1P1-201ENST00000406588 507 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 RPL37P10-201ENST00000412884 288 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 AC245291.1-201ENST00000419501 328 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 AL590632.1-201ENST00000424289 371 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 AC130509.1-201ENST00000464158 433 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 RPL27AP5-201ENST00000469428 449 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 AC110794.1-201ENST00000505816 425 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 Y_RNA.701-201ENST00000516812 110 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 RNU6-928P-201ENST00000516876 104 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 RNU6-1183P-201ENST00000517054 60 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 RNU6-711P-201ENST00000517255 106 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 NUTF2P8-201ENST00000604593 363 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 ELOCP5-201ENST00000604924 333 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 ATP5A1P2-202ENST00000616464 443 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 AL160413.1-201ENST00000622780 310 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 FAM35CP-201ENST00000554755 2470 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 AC010680.1-201ENST00000590024 3590 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 RNA5SP374-201ENST00000362939 125 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 RN7SKP284-201ENST00000411002 343 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 NDUFS5P4-201ENST00000412983 318 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 SNORD56-201ENST00000413522 71 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 AC098831.1-201ENST00000440661 216 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 AC013470.1-201ENST00000453438 462 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 AC093663.1-201ENST00000497190 394 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 RPL39P5-202ENST00000512505 151 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 SNORA64.4-201ENST00000516632 81 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 Y_RNA.718-201ENST00000517110 102 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 FRG2DP-202ENST00000566967 323 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 AC004832.5-201ENST00000608677 401 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 AC064836.2-201ENST00000609491 462 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS4AQ9UN37 AC006111.3-201ENST00000622137 383 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 AC090574.1-201ENST00000623186 233 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 MAPK10-322ENST00000641485 4530 ntBASIC3.19□□□□□ -1.9
VPS4AQ9UN37 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS4AQ9UN37 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS4AQ9UN37 MIR148B-201ENST00000362252 99 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 RNA5SP383-201ENST00000362934 120 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 Y_RNA.431-201ENST00000384086 102 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 MIR10A-201ENST00000385043 110 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 SNORD17-201ENST00000390930 237 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 RN7SKP111-201ENST00000410349 271 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AC099548.1-201ENST00000421443 426 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AC007560.1-201ENST00000426912 237 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AC236972.2-201ENST00000434979 310 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AL714022.1-201ENST00000439897 151 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AC006483.1-201ENST00000487308 313 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 RN7SL504P-201ENST00000494496 287 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AC096745.1-201ENST00000509945 370 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 FCF1P8-201ENST00000510322 597 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 RNU6-559P-201ENST00000516151 98 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 RNA5SP341-201ENST00000516261 117 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS4AQ9UN37 OR1M4P-201ENST00000589199 287 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS4AQ9UN37 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AC138627.2-201ENST00000624202 601 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 AC103988.1-201ENST00000566382 2177 ntBASIC3.18□□□□□ -1.9
VPS4AQ9UN37 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS4AQ9UN37 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.18□□□□□ -1.9
VPS4AQ9UN37 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 RNU6-884P-201ENST00000363889 107 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 RNU6-72P-201ENST00000384285 79 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 RNU6-1297P-201ENST00000384415 104 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 SNORD73A-201ENST00000386062 65 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 RN7SKP123-201ENST00000410732 291 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 PGBD4P6-201ENST00000421501 610 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms