Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 MIR448-201ENST00000362131 111 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 Y_RNA.27-201ENST00000362540 103 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 RNA5SP189-201ENST00000364920 115 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 Y_RNA.518-201ENST00000384552 113 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 MT-TW-201ENST00000387382 68 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 RNU6-1197P-201ENST00000391183 107 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 MIR190B-201ENST00000401119 79 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 RNA5SP120-201ENST00000410900 112 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 AC026784.1-201ENST00000507986 352 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 AC005921.1-201ENST00000510589 286 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 RNU7-175P-201ENST00000515915 61 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 RNA5SP208-201ENST00000516156 78 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 MIR2355-201ENST00000517199 87 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 AC141273.2-201ENST00000618989 130 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 MIR7154-201ENST00000620673 73 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 Z75746.1-201ENST00000440243 2080 ntBASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC87Q9NVE4 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 RNU6-78P-201ENST00000362897 107 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 RNU6-336P-201ENST00000364891 107 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 RNA5SP167-201ENST00000365461 116 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 RNU6-140P-201ENST00000384566 108 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 BTF3L4P2-201ENST00000392798 346 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 NDUFS5P3-201ENST00000450668 321 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 AL645939.1-201ENST00000453429 797 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 AP001486.1-201ENST00000463339 476 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 AP000873.1-201ENST00000463987 400 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 AC008155.2-201ENST00000464337 397 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 RPL31P61-201ENST00000496160 376 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 Y_RNA.713-201ENST00000517013 96 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 RN7SKP289-201ENST00000517244 295 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 AL137849.1-201ENST00000604767 169 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 AC007390.2-201ENST00000606229 3803 ntBASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC87Q9NVE4 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 Y_RNA.14-201ENST00000362415 103 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 RNU6-600P-201ENST00000362524 99 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 Y_RNA.64-201ENST00000362845 102 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 Y_RNA.478-201ENST00000384358 107 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 Y_RNA.483-201ENST00000384380 101 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 RNU6-1026P-201ENST00000384465 108 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 Y_RNA.562-201ENST00000384695 113 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 SNORA12.2-201ENST00000391040 156 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 U3.37-201ENST00000408528 213 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 RNA5SP31-201ENST00000411144 127 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 AP000275.1-201ENST00000411943 390 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 MTATP6P7-201ENST00000453315 681 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 RPL21P10-201ENST00000463521 490 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 RPL39P38-201ENST00000467018 153 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 S100A11P1-201ENST00000477525 312 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 RNU6-1023P-201ENST00000516137 106 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 RNU6-397P-201ENST00000516226 104 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 SNORA31.18-201ENST00000517043 134 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 ZNF192P1-203ENST00000565888 810 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 AL355877.2-201ENST00000603670 358 ntBASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC87Q9NVE4 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 AP000560.1-201ENST00000624150 1937 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 RNU1-33P-201ENST00000364249 162 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 AC139712.2-201ENST00000424302 339 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 ARL5AP4-201ENST00000430731 512 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 VDAC1P3-201ENST00000434069 851 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 RPEP5-201ENST00000441137 268 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 snoU109.2-201ENST00000459316 135 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 AC025465.3-201ENST00000510570 311 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 Y_RNA.706-201ENST00000516933 99 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 AP003733.2-201ENST00000529409 171 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 LINC00933-203ENST00000559812 219 ntBASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 140.2 ms