Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 AC032011.1-201ENST00000611703 1549 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 MIR23B-201ENST00000384832 97 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 RPS29P13-201ENST00000402041 169 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 AL356057.3-201ENST00000402607 340 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 AC093578.1-201ENST00000415219 368 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 RPS29P27-201ENST00000463711 170 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 RPL17P19-201ENST00000489069 552 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 AC021146.2-201ENST00000504736 556 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 AC010265.1-201ENST00000513509 211 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 AC010653.1-201ENST00000571108 881 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 MIR4444-1-201ENST00000581696 74 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 MIR4444-2-201ENST00000584390 74 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 AC092447.9-201ENST00000603395 144 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 HSPE1P7-201ENST00000604681 321 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 MTND4LP5-201ENST00000605152 292 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 uc_338.32-201ENST00000615087 172 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 HMGB1P24-202ENST00000615653 685 ntBASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.74□□□□□ -1.81
PCIF1Q9H4Z3 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 SNORA71.3-201ENST00000362582 128 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 RNU6-942P-201ENST00000363002 107 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 RNA5SP50-201ENST00000363731 107 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 RNU6-99P-201ENST00000364721 107 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 RNU6-1105P-201ENST00000384774 107 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 RNU6-985P-201ENST00000410182 104 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 NDUFS5P4-201ENST00000412983 318 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 AC099799.1-201ENST00000439809 192 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 SNORA43.2-201ENST00000516652 128 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 AP000889.1-201ENST00000530968 660 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 HIGD1AP1-201ENST00000550979 275 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 AL391261.3-201ENST00000557194 520 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 AC020895.1-201ENST00000595362 272 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 AL391261.4-201ENST00000616012 481 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 MIR6134-201ENST00000617606 109 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 AC008121.3-201ENST00000618726 433 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 MTND5P16-201ENST00000460269 1703 ntBASIC3.73□□□□□ -1.81
PCIF1Q9H4Z3 MFSD8-233ENST00000641482 4860 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 RNY1P16-201ENST00000363063 111 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 RNU6-105P-201ENST00000363909 104 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 Y_RNA.527-201ENST00000384573 102 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 MIR449B-201ENST00000384995 97 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 AL358176.2-201ENST00000425769 204 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 CYCSP35-201ENST00000451978 304 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 RPL26P9-201ENST00000457466 433 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 RPL23AP14-201ENST00000468281 468 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 AC116655.1-201ENST00000508324 901 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 MIR3609-201ENST00000582661 80 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 AC024220.1-201ENST00000603675 484 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 AL162373.1-201ENST00000620433 407 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 AC073308.1-201ENST00000623696 305 ntBASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PCIF1Q9H4Z3 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.71□□□□□ -1.81
PCIF1Q9H4Z3 MTND5P9-201ENST00000503854 1755 ntBASIC3.71□□□□□ -1.81
PCIF1Q9H4Z3 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 MIR30E-201ENST00000362104 92 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 RNA5SP119-201ENST00000362715 117 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 SNORD50.1-201ENST00000362987 71 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 Y_RNA.80-201ENST00000362996 102 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 RNU6-1309P-201ENST00000363305 108 ntBASIC3.71□□□□□ -1.82
PCIF1Q9H4Z3 Y_RNA.133-201ENST00000363428 110 ntBASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 144 ms