Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 RNU6-384P-201ENST00000364900 104 ntBASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 RNU5E-7P-201ENST00000365290 117 ntBASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 SNORA40.3-201ENST00000390964 122 ntBASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 SNORA26.8-201ENST00000391306 124 ntBASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 MTND3P17-201ENST00000416968 344 ntBASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 CACYBPP2-201ENST00000453625 678 ntBASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 AC074344.1-201ENST00000512823 224 ntBASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 SNORA4.4-201ENST00000515921 135 ntBASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 NDUFA8P1-201ENST00000605525 367 ntBASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 SEPT14P19-203ENST00000633205 211 ntBASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.16□□□□□ -1.9
CHMP4AQ9BY43 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.15□□□□□ -1.9
CHMP4AQ9BY43 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.15□□□□□ -1.9
CHMP4AQ9BY43 SNORD115-7-201ENST00000365306 82 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 Y_RNA.576-201ENST00000384781 102 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 RNU4-46P-201ENST00000410818 138 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 RNU6-607P-201ENST00000411283 108 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 C1DP2-201ENST00000418167 426 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 AL590556.1-201ENST00000423231 483 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 HMGB1P31-201ENST00000437242 427 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 MTND3P7-201ENST00000474435 343 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 RBBP4P6-201ENST00000508098 202 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 SNORD27.1-201ENST00000516319 72 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 AC060788.1-201ENST00000521318 469 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 AL109918.3-201ENST00000603072 338 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 AL121992.2-201ENST00000606262 256 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 AC109347.2-201ENST00000610220 349 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 RMST_7.1-201ENST00000621935 268 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 MIR1291-201ENST00000627649 87 ntBASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CHMP4AQ9BY43 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 RNU6-1287P-201ENST00000362914 107 ntBASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 SNORD114-30-201ENST00000364448 72 ntBASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 RNU6-1060P-201ENST00000384664 107 ntBASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 RNU6-1245P-201ENST00000411130 106 ntBASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 AL139413.1-201ENST00000421309 217 ntBASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 AL591043.1-201ENST00000432461 424 ntBASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 AC109479.2-201ENST00000517842 174 ntBASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 AC026407.1-201ENST00000518369 204 ntBASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 AC135279.1-201ENST00000543493 504 ntBASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 AC233981.2-201ENST00000611524 1614 ntBASIC3.14□□□□□ -1.91
CHMP4AQ9BY43 AC007336.1-201ENST00000576365 3828 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 AL596028.1-201ENST00000326971 197 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 RNU6-212P-201ENST00000362642 104 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 RNU4-21P-201ENST00000362802 126 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 SNORA25.6-201ENST00000364121 118 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 RNU6-546P-201ENST00000383991 107 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 AL356379.1-201ENST00000414105 126 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 SNRPGP9-201ENST00000456025 225 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 AC018868.1-201ENST00000491307 315 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 MTND2P33-201ENST00000506452 1031 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 LRRC34P2-201ENST00000514850 553 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 AC107953.1-201ENST00000522216 297 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 AC137800.2-201ENST00000574375 120 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 MIR4287-201ENST00000579398 78 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 AC091932.3-201ENST00000624223 323 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 AL359740.1-201ENST00000624340 592 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 AC090517.3-201ENST00000625170 141 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 AC110994.2-201ENST00000635481 492 ntBASIC3.13□□□□□ -1.91
CHMP4AQ9BY43 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 Y_RNA.367-201ENST00000365544 101 ntBASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 RN7SKP284-201ENST00000411002 343 ntBASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 AL135786.1-201ENST00000415892 214 ntBASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 MTND2P29-201ENST00000438595 412 ntBASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 RPL23AP49-201ENST00000492925 468 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms