Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MTCO2P34-201ENST00000421994 607 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC000111.3-201ENST00000433478 193 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 MTND4P32-201ENST00000437189 1237 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS39Q96JC1 KATNBL1P3-201ENST00000443475 909 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 RNA5SP233-201ENST00000459153 113 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 RPL7P43-201ENST00000478876 753 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 ARL2BPP4-201ENST00000506854 471 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC117522.1-201ENST00000509821 380 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC135279.1-201ENST00000543493 504 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 MIR1273C-201ENST00000578669 77 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 MIR4287-201ENST00000579398 78 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 MIR3682-201ENST00000581338 84 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC098848.2-201ENST00000588023 330 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 AL713866.2-201ENST00000603579 219 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 RN7SKP299-201ENST00000606679 301 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC136475.10-201ENST00000620253 385 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC009831.4-201ENST00000620744 325 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 MIR6852-201ENST00000621699 66 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC024940.5-201ENST00000622889 474 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 AL157786.1-207ENST00000627771 695 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC090582.1-201ENST00000636321 199 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC103710.2-202ENST00000641454 2853 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 AP006437.1-201ENST00000641440 3685 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 AC006020.1-201ENST00000420179 1854 ntBASIC2.22□□□□□ -2.05
VPS39Q96JC1 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS39Q96JC1 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.21□□□□□ -2.05
VPS39Q96JC1 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.21□□□□□ -2.06
VPS39Q96JC1 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
VPS39Q96JC1 Y_RNA.367-201ENST00000365544 101 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 SNORD116-9-201ENST00000384000 95 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 RNU6-74P-201ENST00000384235 107 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 SNORD116-3-201ENST00000384287 95 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 RNU6-166P-201ENST00000384371 107 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 SNORD116-7-201ENST00000384404 95 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 SNORD116-5-201ENST00000384462 95 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 Y_RNA.576-201ENST00000384781 102 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 SNORA48.3-201ENST00000391081 134 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
VPS39Q96JC1 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
VPS39Q96JC1 HMGN2P39-201ENST00000398005 273 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 DEFB108C-201ENST00000400154 252 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 MYL8P-204ENST00000431574 518 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS39Q96JC1 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS39Q96JC1 MTND1P27-201ENST00000451117 902 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 AC093534.1-201ENST00000504977 132 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 AC116562.3-201ENST00000506136 177 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 MTND4P2-201ENST00000507767 1203 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.21□□□□□ -2.06
VPS39Q96JC1 SNORA4.4-201ENST00000515921 135 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 AC107953.1-201ENST00000522216 297 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 FAM92A1P1-201ENST00000528023 890 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 AC068587.5-201ENST00000528506 175 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS39Q96JC1 AL157871.3-201ENST00000557231 293 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 AC009509.4-201ENST00000619202 509 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 AL359740.1-201ENST00000624340 592 ntBASIC2.21□□□□□ -2.06
VPS39Q96JC1 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS39Q96JC1 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
VPS39Q96JC1 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
VPS39Q96JC1 AL359851.1-201ENST00000569460 4997 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 AL390237.1-201ENST00000404226 1415 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 Y_RNA.33-201ENST00000362591 102 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 Y_RNA.77-201ENST00000362962 107 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 SNORD114-19-201ENST00000363072 75 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 RNU6-181P-201ENST00000363225 107 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 SNORA62.1-201ENST00000364287 154 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 SNORA25B-201ENST00000365507 128 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 MIR578-201ENST00000384828 96 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 FTH1P15-201ENST00000406984 280 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.2□□□□□ -2.06
VPS39Q96JC1 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS39Q96JC1 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.2□□□□□ -2.06
VPS39Q96JC1 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS39Q96JC1 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS39Q96JC1 AL031659.1-201ENST00000447075 539 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 AL583843.1-201ENST00000456070 346 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 AL162395.1-201ENST00000457882 422 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 TPT1P7-201ENST00000458300 517 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 snoU109.2-201ENST00000459316 135 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 MIR514B-201ENST00000516774 80 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 RNU6-445P-201ENST00000516949 107 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 OR5AL2P-201ENST00000532185 920 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS39Q96JC1 ADI1P3-201ENST00000549509 470 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 AL031274.2-201ENST00000599419 203 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 AL670379.4-201ENST00000605279 254 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 AC099842.1-201ENST00000619919 596 ntBASIC2.2□□□□□ -2.06
VPS39Q96JC1 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
VPS39Q96JC1 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.2□□□□□ -2.06
VPS39Q96JC1 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
VPS39Q96JC1 AC008555.8-201ENST00000623602 2168 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 166.1 ms