Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 AC010615.1-201ENST00000594254 1764 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 AC009812.4-201ENST00000569134 1805 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 OR56A5-201ENST00000340110 738 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 Y_RNA.214-201ENST00000364201 112 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 Y_RNA.350-201ENST00000365409 98 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 RNU6-933P-201ENST00000384424 107 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 MIR625-201ENST00000385047 85 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 MIR301A-201ENST00000385261 86 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 RNU6-325P-201ENST00000411132 105 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 AL513331.1-201ENST00000411908 397 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 AL357552.1-201ENST00000445254 415 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 SNORD127-201ENST00000458892 86 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 RNU6-1037P-201ENST00000459571 107 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 RN7SL93P-201ENST00000463035 293 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 AC109925.1-201ENST00000478069 331 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 AC113155.1-201ENST00000511141 769 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 AC144568.1-201ENST00000520139 137 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 SNORD84-203ENST00000584275 78 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 VN1R91P-201ENST00000594377 169 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 AC004805.2-201ENST00000605382 482 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 AL353748.2-201ENST00000622148 471 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 AL512643.1-201ENST00000635735 524 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 Z99571.1-201ENST00000636677 394 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 U6.104-201ENST00000637979 90 ntBASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.35□□□□□ -1.71
USHBP1Q8N6Y0 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 SNORA80A-201ENST00000363922 136 ntBASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 RNU6-1074P-201ENST00000383995 104 ntBASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 SNORA44-201ENST00000384584 132 ntBASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 COTL1P1-201ENST00000422309 375 ntBASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 ELOCP20-201ENST00000422460 345 ntBASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 AL592045.1-201ENST00000429867 352 ntBASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 CEACAMP4-201ENST00000457676 421 ntBASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 UBE2DNL-203ENST00000474922 222 ntBASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 HSPE1P6-201ENST00000479457 291 ntBASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 SUMO2P6-201ENST00000505273 288 ntBASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 CPDP1-201ENST00000579660 283 ntBASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 AC141273.2-201ENST00000618989 130 ntBASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 AC103858.2-201ENST00000621471 543 ntBASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.34□□□□□ -1.71
USHBP1Q8N6Y0 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
USHBP1Q8N6Y0 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.34□□□□□ -1.72
USHBP1Q8N6Y0 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
USHBP1Q8N6Y0 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
USHBP1Q8N6Y0 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 MT-TW-201ENST00000387382 68 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 AL513475.1-201ENST00000406602 315 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 RNU4-47P-201ENST00000410876 114 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 ARL5AP4-201ENST00000430731 512 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 AL353705.1-201ENST00000433468 480 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 OR2AQ1P-201ENST00000451972 200 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 AC022493.1-201ENST00000492984 337 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 SNORA25.11-201ENST00000515935 105 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 Y_RNA.687-201ENST00000516558 91 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 TRAV32-201ENST00000553993 340 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 AC006600.1-201ENST00000572529 153 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 MIR3976-201ENST00000606807 139 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 AC107294.1-201ENST00000609524 467 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 RMST_4.1-201ENST00000616886 107 ntBASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USHBP1Q8N6Y0 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 132.7 ms