Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC012119.1-201ENST00000603184 222 ntBASIC3.59□□□□□ -1.83
VPS53Q5VIR6 AC098826.3-201ENST00000603823 466 ntBASIC3.59□□□□□ -1.83
VPS53Q5VIR6 AL670379.10-201ENST00000604330 253 ntBASIC3.59□□□□□ -1.83
VPS53Q5VIR6 AL670379.9-201ENST00000605428 253 ntBASIC3.59□□□□□ -1.83
VPS53Q5VIR6 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.59□□□□□ -1.84
VPS53Q5VIR6 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.59□□□□□ -1.84
VPS53Q5VIR6 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AP003122.5-201ENST00000527668 3766 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 SNORA71.1-201ENST00000364523 117 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 MIR301A-201ENST00000385261 86 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 SAR1AP2-201ENST00000392696 594 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 RPS4XP7-201ENST00000406274 780 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 RNU4-14P-201ENST00000410858 122 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 RPS24P13-201ENST00000442520 397 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 snoU13.28-201ENST00000459235 104 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AC117503.1-201ENST00000472241 394 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 RPS29P26-201ENST00000477483 171 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AC008526.1-201ENST00000509149 338 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 TBCAP3-201ENST00000512475 312 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 RNU6-1170P-201ENST00000515974 106 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 SCARNA15.1-201ENST00000516384 125 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 RNU6-143P-201ENST00000516942 93 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 Y_RNA.718-201ENST00000517110 102 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 MIR548AC-201ENST00000585049 88 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AL161798.1-201ENST00000604630 131 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AL133215.3-201ENST00000609801 448 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 Y_RNA.812-201ENST00000610788 101 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 Y_RNA.784-201ENST00000613803 101 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 Y_RNA.787-201ENST00000616522 101 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 Y_RNA.780-201ENST00000617336 101 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 Y_RNA.801-201ENST00000619005 101 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 AC008264.2-201ENST00000610193 3731 ntBASIC3.58□□□□□ -1.84
VPS53Q5VIR6 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS53Q5VIR6 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
VPS53Q5VIR6 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS53Q5VIR6 SNORA4.3-201ENST00000365564 137 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 RNU6-1027P-201ENST00000383998 107 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 RNU6-198P-201ENST00000384258 104 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 SNORD116-29-201ENST00000384516 83 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 RNY4P36-201ENST00000391116 96 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 MTCYBP4-201ENST00000401524 249 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 RPL21P90-201ENST00000415692 466 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 ATG3P1-201ENST00000419507 911 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS53Q5VIR6 SKA2P1-201ENST00000425592 390 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AL592045.1-201ENST00000429867 352 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AC022018.1-201ENST00000430685 241 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AL360271.2-201ENST00000447710 161 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS53Q5VIR6 RNU7-152P-201ENST00000458982 64 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 S100A11P2-201ENST00000467589 312 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 SUMO2P6-201ENST00000505273 288 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS53Q5VIR6 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS53Q5VIR6 RN7SKP24-201ENST00000515888 284 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AC087854.1-201ENST00000519706 414 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS53Q5VIR6 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AL121821.2-201ENST00000556081 394 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AC093249.1-201ENST00000567049 203 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS53Q5VIR6 MIR1273C-201ENST00000578669 77 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AC010680.1-201ENST00000590024 3590 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AC073539.2-201ENST00000597113 165 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AL133393.1-201ENST00000603277 287 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AC005034.5-201ENST00000604219 466 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 NUTF2P8-201ENST00000604593 363 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AL161629.2-201ENST00000615347 275 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AL359757.2-201ENST00000624309 274 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 AL512643.1-201ENST00000635735 524 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 Z99571.1-201ENST00000636677 394 ntBASIC3.57□□□□□ -1.84
VPS53Q5VIR6 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS53Q5VIR6 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS53Q5VIR6 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS53Q5VIR6 RNU6-562P-201ENST00000362731 107 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 RNU6-270P-201ENST00000364131 105 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 RNA5SP139-201ENST00000364340 117 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 RNU6-512P-201ENST00000364438 103 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 CD24P4-201ENST00000382840 243 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 RNU6-217P-201ENST00000384164 104 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms