Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
PDLIM3Q53GG5 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
PDLIM3Q53GG5 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
PDLIM3Q53GG5 RNU6-858P-201ENST00000362436 107 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 SNORA68.1-201ENST00000364537 132 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 RNU6-384P-201ENST00000364900 104 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.55□□□□□ -2
PDLIM3Q53GG5 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.55□□□□□ -2
PDLIM3Q53GG5 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 AC093151.1-201ENST00000427711 313 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 MTATP6P7-201ENST00000453315 681 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 DYNLL1P5-201ENST00000467158 270 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 HMGB1P30-201ENST00000492455 606 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 AL117351.2-201ENST00000513571 157 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 LRRC34P2-201ENST00000514850 553 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 MIR892C-201ENST00000516410 77 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 SNORD60.2-201ENST00000516883 86 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 SNORA31.18-201ENST00000517043 134 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 AC022634.1-201ENST00000520765 532 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 AP000763.2-201ENST00000540641 163 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 AC110491.1-201ENST00000562191 2010 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 AL138976.2-201ENST00000563989 694 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 MIR2682-201ENST00000580305 110 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 AC104458.1-201ENST00000608243 463 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 AC092807.2-201ENST00000609367 243 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 uc_338.25-201ENST00000613756 156 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 AC022418.1-201ENST00000624118 445 ntBASIC2.55□□□□□ -2
PDLIM3Q53GG5 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.55□□□□□ -2
PDLIM3Q53GG5 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
PDLIM3Q53GG5 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.54□□□□□ -2
PDLIM3Q53GG5 RNU6-1252P-201ENST00000363054 104 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 Y_RNA.231-201ENST00000364358 102 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 SNORD14B-201ENST00000364533 90 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 RNU6-1280P-201ENST00000365211 107 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 SNORA32.2-201ENST00000384049 122 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 AL513475.1-201ENST00000406602 315 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.54□□□□□ -2
PDLIM3Q53GG5 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.54□□□□□ -2
PDLIM3Q53GG5 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.54□□□□□ -2
PDLIM3Q53GG5 AC103975.1-201ENST00000482506 483 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.54□□□□□ -2
PDLIM3Q53GG5 AC098799.2-201ENST00000509466 868 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.54□□□□□ -2
PDLIM3Q53GG5 AC114781.4-201ENST00000513707 639 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 AC091826.1-201ENST00000514065 313 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 NACAP3-201ENST00000552100 481 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 AL133241.1-201ENST00000556832 487 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.54□□□□□ -2
PDLIM3Q53GG5 AC021739.1-201ENST00000559631 174 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 AC138761.3-201ENST00000579993 334 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 MIR4424-201ENST00000585257 86 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 VN1R80P-201ENST00000597126 338 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 RNU6-89P-201ENST00000606519 100 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 AL627309.6-201ENST00000606857 840 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 Z82243.1-201ENST00000609432 473 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 AL121757.2-201ENST00000611223 313 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 AL020991.1-201ENST00000612314 373 ntBASIC2.54□□□□□ -2
PDLIM3Q53GG5 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.54□□□□□ -2
PDLIM3Q53GG5 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
PDLIM3Q53GG5 AC138393.1-203ENST00000327086 343 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-37P-201ENST00000362692 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-11P-201ENST00000364234 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-25P-201ENST00000383873 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-1-201ENST00000383898 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-48P-201ENST00000384161 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-36P-201ENST00000384172 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-4P-201ENST00000384205 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-5P-201ENST00000384238 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-3P-201ENST00000384314 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-16P-201ENST00000384385 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-15P-201ENST00000384534 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-2-201ENST00000384627 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-29P-201ENST00000384637 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-9-201ENST00000384776 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNU6-33P-201ENST00000384793 107 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 MIR34A-201ENST00000385130 110 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 AL512633.1-201ENST00000399931 655 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNA5SP274-201ENST00000410484 108 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 RNA5SP184-201ENST00000411071 108 ntBASIC2.53□□□□□ -2
PDLIM3Q53GG5 POLHP1-201ENST00000411806 470 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 189.8 ms