Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 MTCYBP5-201ENST00000423752 1135 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AC008267.5-201ENST00000424928 265 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 ISCA1P6-201ENST00000427740 390 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AC027124.2-201ENST00000428249 105 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AC009238.1-201ENST00000442165 424 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AL022238.1-201ENST00000442557 355 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AC009237.6-201ENST00000446969 424 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 GAPDHP17-201ENST00000449858 1001 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 Y_RNA.687-201ENST00000516558 91 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AC060788.1-201ENST00000521318 469 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 RANP3-201ENST00000530970 276 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 CR383656.8-201ENST00000549046 145 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AC007229.1-201ENST00000590455 412 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AC138649.3-201ENST00000622154 254 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 SCARNA4-202ENST00000625402 129 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 RNU6-1010P-201ENST00000362757 107 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 RNU1-57P-201ENST00000384491 166 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 Y_RNA.576-201ENST00000384781 102 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AL445529.1-201ENST00000398713 389 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AL023284.1-201ENST00000403956 276 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 RNU6-387P-201ENST00000411331 105 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 UBE2V1P10-201ENST00000414685 269 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 RPL21P90-201ENST00000415692 466 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AL135786.1-201ENST00000415892 214 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 EDDM3CP-201ENST00000415977 425 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 PGBD4P6-201ENST00000421501 610 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AIMP1P2-201ENST00000425294 312 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AC012308.1-201ENST00000451232 178 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AL033528.1-201ENST00000453780 140 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 snoU109.1-201ENST00000459339 135 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 RNU1-86P-201ENST00000516108 154 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 RNU1-107P-201ENST00000516617 154 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 RNU2-19P-201ENST00000517288 84 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 MIR4513-201ENST00000581077 86 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AC073410.2-201ENST00000603240 332 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 Y_RNA.783-201ENST00000613546 102 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AP001506.1-201ENST00000615444 211 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 HAUS6P2-201ENST00000433254 2404 ntBASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.23□□□□□ -2.05
CCDC40Q4G0X9 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 Y_RNA.169-201ENST00000363745 96 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 SNORD115-7-201ENST00000365306 82 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 RNU6-487P-201ENST00000365430 104 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 RNU6-1032P-201ENST00000384100 107 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 SNORD116-20-201ENST00000384529 92 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 SNORA26.8-201ENST00000391306 124 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 AL139156.1-201ENST00000412785 841 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 Z98742.3-201ENST00000418637 326 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 AC000111.3-201ENST00000433478 193 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 MTCO3P5-201ENST00000433620 714 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 AC104058.1-201ENST00000448028 297 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 AC107032.1-201ENST00000485945 480 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 AP001025.1-201ENST00000486139 332 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 AC010486.1-201ENST00000511793 424 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 AP002770.2-201ENST00000543613 532 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 MIR1273D-201ENST00000577266 86 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 MIR3935-201ENST00000583472 104 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 RPL30P11-203ENST00000598995 310 ntBASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.22□□□□□ -2.05
CCDC40Q4G0X9 FARSBP1-201ENST00000435808 1778 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 Y_RNA.367-201ENST00000365544 101 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 RNU6-622P-201ENST00000384272 103 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 SNORA67.3-201ENST00000384366 140 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 RNU6-297P-201ENST00000384636 107 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 SNORA64-201ENST00000384674 134 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 MIR186-201ENST00000384988 86 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AL591034.2-201ENST00000402839 359 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 MTND2P18-201ENST00000419962 1030 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 151.9 ms