Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNU6-1078P-201ENST00000364522 103 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC0.36□□□□□ -2.35
CHD9Q3L8U1 SNORD14D-201ENST00000384390 87 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 AC097463.2-201ENST00000421074 142 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 C1DP1-201ENST00000426049 402 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 AC245047.4-201ENST00000433189 144 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 RSL24D1P8-201ENST00000434442 492 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 SUMO1P1-201ENST00000497904 306 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 COX7A2P2-201ENST00000505291 250 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC0.36□□□□□ -2.35
CHD9Q3L8U1 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC0.36□□□□□ -2.35
CHD9Q3L8U1 BPTFP1-201ENST00000579209 492 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.36□□□□□ -2.35
CHD9Q3L8U1 AC013470.4-201ENST00000619978 986 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 Y_RNA.255-201ENST00000364581 97 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 RNU6-611P-201ENST00000384276 104 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 DNAJA1P2-201ENST00000421360 1197 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 UBE2V1P8-201ENST00000437166 265 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 GTF2IP13-201ENST00000438487 386 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 RPL36AP48-201ENST00000485521 314 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 AC048346.1-201ENST00000510247 144 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 AP003122.4-201ENST00000530980 758 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 AL121890.5-201ENST00000620848 304 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 MIR4275-201ENST00000636486 87 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 MIR101-1-201ENST00000362265 75 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 MTCO1P56-201ENST00000401674 224 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 RPL26P27-201ENST00000414397 437 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 VN1R36P-201ENST00000414936 291 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 MTCO2P20-201ENST00000437339 673 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 MTND6P13-201ENST00000443510 523 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 AL353691.1-201ENST00000451332 387 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 PSMC1P5-201ENST00000512850 177 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 RN7SKP258-201ENST00000517151 304 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 AC106800.4-201ENST00000614905 153 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 MIR8074-201ENST00000615081 81 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 RNU1-124P-201ENST00000363861 145 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 SNORD95.1-201ENST00000364099 68 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 Y_RNA.572-201ENST00000384757 98 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 MIR7-1-201ENST00000384871 110 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 RNU6-840P-201ENST00000517275 65 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 AL138726.1-201ENST00000614873 333 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 AL590240.4-201ENST00000616908 390 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 U1.36-201ENST00000620684 176 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 RNU6-414P-201ENST00000363705 104 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 AC099513.1-201ENST00000490423 301 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 AL133373.1-201ENST00000497098 94 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 SNORA3.4-201ENST00000515969 96 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 ACA59.2-201ENST00000517061 156 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 Y_RNA.757-201ENST00000578934 114 ntBASIC0.35□□□□□ -2.35
CHD9Q3L8U1 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC0.35□□□□□ -2.35
CHD9Q3L8U1 RNU6-543P-201ENST00000362576 108 ntBASIC0.34□□□□□ -2.35
CHD9Q3L8U1 RNY4P24-201ENST00000362735 96 ntBASIC0.34□□□□□ -2.35
CHD9Q3L8U1 RNU4-73P-201ENST00000363164 141 ntBASIC0.34□□□□□ -2.35
CHD9Q3L8U1 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.34□□□□□ -2.35
CHD9Q3L8U1 SNORA25-201ENST00000384384 134 ntBASIC0.34□□□□□ -2.35
CHD9Q3L8U1 RNU6-939P-201ENST00000384634 107 ntBASIC0.34□□□□□ -2.35
CHD9Q3L8U1 CCNG1P1-201ENST00000406783 885 ntBASIC0.34□□□□□ -2.35
CHD9Q3L8U1 RPL37P10-201ENST00000412884 288 ntBASIC0.34□□□□□ -2.35
CHD9Q3L8U1 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC0.34□□□□□ -2.35
CHD9Q3L8U1 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC0.34□□□□□ -2.35
CHD9Q3L8U1 AL050341.1-201ENST00000447743 313 ntBASIC0.34□□□□□ -2.35
CHD9Q3L8U1 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.34□□□□□ -2.35
CHD9Q3L8U1 SNORD124-201ENST00000459577 104 ntBASIC0.34□□□□□ -2.35
CHD9Q3L8U1 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC0.34□□□□□ -2.35
CHD9Q3L8U1 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.34□□□□□ -2.35
CHD9Q3L8U1 RNU6-581P-201ENST00000516214 105 ntBASIC0.34□□□□□ -2.35
CHD9Q3L8U1 AC093249.1-201ENST00000567049 203 ntBASIC0.34□□□□□ -2.35
CHD9Q3L8U1 MIR5190-201ENST00000581537 80 ntBASIC0.34□□□□□ -2.35
CHD9Q3L8U1 AL391813.1-201ENST00000603098 260 ntBASIC0.34□□□□□ -2.35
CHD9Q3L8U1 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC0.34□□□□□ -2.35
CHD9Q3L8U1 MIR19B1-201ENST00000384829 87 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 MIR32-201ENST00000384965 70 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 MIR1262-201ENST00000408276 93 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 RNU6-77P-201ENST00000410554 91 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 AC138623.1-201ENST00000418060 216 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 AC013410.2-201ENST00000422627 201 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC0.34□□□□□ -2.36
CHD9Q3L8U1 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC0.34□□□□□ -2.36
CHD9Q3L8U1 AC098831.1-201ENST00000440661 216 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 AL358794.1-201ENST00000445689 381 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 MTND1P16-201ENST00000465177 898 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 AC006199.1-201ENST00000548728 219 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 AC091489.2-201ENST00000566263 604 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 BNIP3P16-201ENST00000589779 534 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 VN1R88P-201ENST00000596787 292 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms