Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL365184.2-201ENST00000431139 435 ntBASIC2.05□□□□□ -2.08
MSH6P52701 RPL22P17-201ENST00000438729 315 ntBASIC2.05□□□□□ -2.08
MSH6P52701 MTND4P25-201ENST00000441039 533 ntBASIC2.05□□□□□ -2.08
MSH6P52701 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.05□□□□□ -2.08
MSH6P52701 RNU6-953P-201ENST00000459154 107 ntBASIC2.05□□□□□ -2.08
MSH6P52701 AL121769.1-201ENST00000469473 401 ntBASIC2.05□□□□□ -2.08
MSH6P52701 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.05□□□□□ -2.08
MSH6P52701 AC112204.1-201ENST00000502591 103 ntBASIC2.05□□□□□ -2.08
MSH6P52701 SNORA3.4-201ENST00000515969 96 ntBASIC2.05□□□□□ -2.08
MSH6P52701 RNU2-10P-201ENST00000516375 211 ntBASIC2.05□□□□□ -2.08
MSH6P52701 RNU6-1223P-201ENST00000517124 104 ntBASIC2.05□□□□□ -2.08
MSH6P52701 BTF3P12-201ENST00000519620 469 ntBASIC2.05□□□□□ -2.08
MSH6P52701 AC022616.6-201ENST00000520479 119 ntBASIC2.05□□□□□ -2.08
MSH6P52701 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.05□□□□□ -2.08
MSH6P52701 AC006199.1-201ENST00000548728 219 ntBASIC2.05□□□□□ -2.08
MSH6P52701 ZNF519P3-201ENST00000557158 1032 ntBASIC2.05□□□□□ -2.08
MSH6P52701 AC023824.2-201ENST00000566185 400 ntBASIC2.05□□□□□ -2.08
MSH6P52701 AC024619.4-201ENST00000580924 316 ntBASIC2.05□□□□□ -2.08
MSH6P52701 AC022022.2-201ENST00000602989 360 ntBASIC2.05□□□□□ -2.08
MSH6P52701 AC174048.1-201ENST00000603389 144 ntBASIC2.05□□□□□ -2.08
MSH6P52701 MTCYBP22-201ENST00000603788 447 ntBASIC2.05□□□□□ -2.08
MSH6P52701 AC104010.1-201ENST00000616889 150 ntBASIC2.05□□□□□ -2.08
MSH6P52701 MTND5P42-201ENST00000637720 498 ntBASIC2.05□□□□□ -2.08
MSH6P52701 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.05□□□□□ -2.08
MSH6P52701 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.04□□□□□ -2.08
MSH6P52701 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.04□□□□□ -2.08
MSH6P52701 Y_RNA.36-201ENST00000362602 112 ntBASIC2.04□□□□□ -2.08
MSH6P52701 SNORA38-201ENST00000363946 132 ntBASIC2.04□□□□□ -2.08
MSH6P52701 MIR598-201ENST00000384868 97 ntBASIC2.04□□□□□ -2.08
MSH6P52701 AL355497.1-201ENST00000406262 551 ntBASIC2.04□□□□□ -2.08
MSH6P52701 AC006366.1-201ENST00000422002 759 ntBASIC2.04□□□□□ -2.08
MSH6P52701 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.04□□□□□ -2.08
MSH6P52701 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.04□□□□□ -2.08
MSH6P52701 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC2.04□□□□□ -2.08
MSH6P52701 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.04□□□□□ -2.08
MSH6P52701 AL161651.1-201ENST00000440882 223 ntBASIC2.04□□□□□ -2.08
MSH6P52701 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC2.04□□□□□ -2.08
MSH6P52701 ZNF736P5Y-201ENST00000451173 805 ntBASIC2.04□□□□□ -2.08
MSH6P52701 MTND1P3-201ENST00000484956 952 ntBASIC2.04□□□□□ -2.08
MSH6P52701 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC2.04□□□□□ -2.08
MSH6P52701 RNU6-143P-201ENST00000516942 93 ntBASIC2.04□□□□□ -2.08
MSH6P52701 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC2.04□□□□□ -2.08
MSH6P52701 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.04□□□□□ -2.08
MSH6P52701 MTND4LP18-201ENST00000526864 291 ntBASIC2.04□□□□□ -2.08
MSH6P52701 MTND1P24-201ENST00000552175 861 ntBASIC2.04□□□□□ -2.08
MSH6P52701 AC034229.4-201ENST00000607861 441 ntBASIC2.04□□□□□ -2.08
MSH6P52701 AC009090.3-201ENST00000616553 565 ntBASIC2.04□□□□□ -2.08
MSH6P52701 AC006338.1-201ENST00000618453 749 ntBASIC2.04□□□□□ -2.08
MSH6P52701 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
MSH6P52701 AP000560.1-201ENST00000624150 1937 ntBASIC2.03□□□□□ -2.08
MSH6P52701 Y_RNA.534-201ENST00000384599 112 ntBASIC2.03□□□□□ -2.08
MSH6P52701 RNU6-220P-201ENST00000390919 107 ntBASIC2.03□□□□□ -2.08
MSH6P52701 HIGD1AP15-201ENST00000416198 280 ntBASIC2.03□□□□□ -2.08
MSH6P52701 SEPT2P1-201ENST00000419651 180 ntBASIC2.03□□□□□ -2.08
MSH6P52701 MTND2P9-201ENST00000422293 931 ntBASIC2.03□□□□□ -2.08
MSH6P52701 AC010099.3-201ENST00000423896 409 ntBASIC2.03□□□□□ -2.08
MSH6P52701 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC2.03□□□□□ -2.08
MSH6P52701 AL591704.1-201ENST00000432574 275 ntBASIC2.03□□□□□ -2.08
MSH6P52701 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.03□□□□□ -2.08
MSH6P52701 MTND5P2-201ENST00000442927 1142 ntBASIC2.03□□□□□ -2.08
MSH6P52701 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.03□□□□□ -2.08
MSH6P52701 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.03□□□□□ -2.08
MSH6P52701 RNU6-1092P-201ENST00000516955 87 ntBASIC2.03□□□□□ -2.08
MSH6P52701 RNU6-1183P-201ENST00000517054 60 ntBASIC2.03□□□□□ -2.08
MSH6P52701 AC009902.1-201ENST00000519351 183 ntBASIC2.03□□□□□ -2.08
MSH6P52701 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.03□□□□□ -2.08
MSH6P52701 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.03□□□□□ -2.08
MSH6P52701 MIR151B-201ENST00000584249 96 ntBASIC2.03□□□□□ -2.08
MSH6P52701 AC008121.1-201ENST00000603244 268 ntBASIC2.03□□□□□ -2.08
MSH6P52701 AC068944.2-201ENST00000610373 403 ntBASIC2.03□□□□□ -2.08
MSH6P52701 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.03□□□□□ -2.08
MSH6P52701 MIR7844-201ENST00000616161 122 ntBASIC2.03□□□□□ -2.08
MSH6P52701 AP002791.1-201ENST00000623291 381 ntBASIC2.03□□□□□ -2.08
MSH6P52701 AC012640.5-201ENST00000623897 319 ntBASIC2.03□□□□□ -2.08
MSH6P52701 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.03□□□□□ -2.08
MSH6P52701 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.03□□□□□ -2.08
MSH6P52701 SNORA4.3-201ENST00000365564 137 ntBASIC2.02□□□□□ -2.09
MSH6P52701 RNU6-533P-201ENST00000384144 107 ntBASIC2.02□□□□□ -2.09
MSH6P52701 Y_RNA.608-201ENST00000410647 95 ntBASIC2.02□□□□□ -2.09
MSH6P52701 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.02□□□□□ -2.09
MSH6P52701 AC011233.1-201ENST00000422812 283 ntBASIC2.02□□□□□ -2.09
MSH6P52701 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.02□□□□□ -2.09
MSH6P52701 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.02□□□□□ -2.09
MSH6P52701 MTND1P12-201ENST00000455231 147 ntBASIC2.02□□□□□ -2.09
MSH6P52701 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.02□□□□□ -2.09
MSH6P52701 RPS27P21-201ENST00000486977 252 ntBASIC2.02□□□□□ -2.09
MSH6P52701 RNU6-1129P-201ENST00000515964 104 ntBASIC2.02□□□□□ -2.09
MSH6P52701 SCARNA3-201ENST00000517097 143 ntBASIC2.02□□□□□ -2.09
MSH6P52701 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.02□□□□□ -2.09
MSH6P52701 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.02□□□□□ -2.09
MSH6P52701 AL121821.2-201ENST00000556081 394 ntBASIC2.02□□□□□ -2.09
MSH6P52701 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.02□□□□□ -2.09
MSH6P52701 AL138976.2-201ENST00000563989 694 ntBASIC2.02□□□□□ -2.09
MSH6P52701 MIR5697-201ENST00000578045 78 ntBASIC2.02□□□□□ -2.09
MSH6P52701 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.02□□□□□ -2.09
MSH6P52701 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
MSH6P52701 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.02□□□□□ -2.09
MSH6P52701 AC105129.3-201ENST00000605455 485 ntBASIC2.02□□□□□ -2.09
MSH6P52701 uc_338.14-201ENST00000613162 166 ntBASIC2.02□□□□□ -2.09
MSH6P52701 AL449363.1-201ENST00000617815 186 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms