Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MIR548AC-201ENST00000585049 88 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXC9P31274 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
HOXC9P31274 DUSP12P1-201ENST00000612874 516 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 AC007014.2-201ENST00000615581 479 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 U6.99-201ENST00000637524 83 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 AC022336.2-201ENST00000568966 2538 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXC9P31274 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXC9P31274 Y_RNA.89-201ENST00000363031 102 ntBASIC2.98□□□□□ -1.93
HOXC9P31274 Y_RNA.295-201ENST00000364918 102 ntBASIC2.98□□□□□ -1.93
HOXC9P31274 CD24P4-201ENST00000382840 243 ntBASIC2.98□□□□□ -1.93
HOXC9P31274 RNU6-658P-201ENST00000384606 106 ntBASIC2.98□□□□□ -1.93
HOXC9P31274 MIR578-201ENST00000384828 96 ntBASIC2.98□□□□□ -1.93
HOXC9P31274 NDUFB4P5-201ENST00000415445 361 ntBASIC2.98□□□□□ -1.93
HOXC9P31274 RPL21P90-201ENST00000415692 466 ntBASIC2.98□□□□□ -1.93
HOXC9P31274 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXC9P31274 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXC9P31274 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXC9P31274 AC007560.1-201ENST00000426912 237 ntBASIC2.98□□□□□ -1.93
HOXC9P31274 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXC9P31274 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXC9P31274 RPL21P99-201ENST00000480369 423 ntBASIC2.98□□□□□ -1.93
HOXC9P31274 AF213884.2-201ENST00000510417 903 ntBASIC2.98□□□□□ -1.93
HOXC9P31274 SUB1P1-201ENST00000524415 382 ntBASIC2.98□□□□□ -1.93
HOXC9P31274 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXC9P31274 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXC9P31274 MIR1273C-201ENST00000578669 77 ntBASIC2.98□□□□□ -1.93
HOXC9P31274 FER-210ENST00000628534 558 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXC9P31274 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXC9P31274 MAPK10-322ENST00000641485 4530 ntBASIC2.98□□□□□ -1.93
HOXC9P31274 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXC9P31274 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXC9P31274 AL139276.1-201ENST00000311910 1001 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 RNU6-715P-201ENST00000365204 103 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 RNU6-395P-201ENST00000365662 106 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 RNU6-877P-201ENST00000383868 107 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 RNU6-1179P-201ENST00000384667 107 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 RNU6-908P-201ENST00000410160 94 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.97□□□□□ -1.93
HOXC9P31274 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXC9P31274 RPL26P9-201ENST00000457466 433 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 SCARNA18-201ENST00000459004 134 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 MTAPP1-201ENST00000489154 819 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXC9P31274 RNU6-572P-201ENST00000516724 80 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.97□□□□□ -1.93
HOXC9P31274 AC009902.1-201ENST00000519351 183 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXC9P31274 TRAV37-201ENST00000553906 342 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXC9P31274 AL391261.3-201ENST00000557194 520 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXC9P31274 AC092325.1-201ENST00000566449 554 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXC9P31274 AP000907.4-201ENST00000604143 237 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXC9P31274 AC068944.2-201ENST00000610373 403 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 uc_338.34-201ENST00000617467 174 ntBASIC2.97□□□□□ -1.93
HOXC9P31274 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXC9P31274 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXC9P31274 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXC9P31274 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
HOXC9P31274 SNORD3E-201ENST00000362899 217 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 RNU6-799P-201ENST00000363567 107 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 RNU4-66P-201ENST00000365199 138 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
HOXC9P31274 RNU6-1027P-201ENST00000383998 107 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 SNORA75B-201ENST00000384053 137 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 Y_RNA.573-201ENST00000384763 105 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXC9P31274 MIR888-201ENST00000401186 77 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 MIR1277-201ENST00000408536 78 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 OR9R1P-201ENST00000412200 877 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 AL353729.1-201ENST00000425044 720 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXC9P31274 RNU7-180P-201ENST00000459240 63 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 AC091179.1-201ENST00000461606 579 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXC9P31274 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXC9P31274 AC112206.3-201ENST00000514578 389 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 RNU6-1038P-201ENST00000516516 104 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 SNORA31.19-201ENST00000517079 126 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 AL137161.1-201ENST00000532231 390 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXC9P31274 DEFB122-202ENST00000569013 197 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXC9P31274 HMGN2P15-201ENST00000585707 270 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 AC025754.2-201ENST00000606491 432 ntBASIC2.96□□□□□ -1.94
HOXC9P31274 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXC9P31274 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXC9P31274 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXC9P31274 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXC9P31274 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
HOXC9P31274 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HOXC9P31274 RNU6-451P-201ENST00000362921 107 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 Y_RNA.248-201ENST00000364501 109 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 RNU6-534P-201ENST00000364877 106 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 U8.8-201ENST00000365399 135 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 RNU6-1127P-201ENST00000384580 107 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms