Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PRR13P7-201ENST00000605538 430 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AL670379.7-201ENST00000605823 252 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AC131235.4-201ENST00000609288 620 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AC012360.2-201ENST00000609349 391 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC1.05□□□□□ -2.24
HLA-DMBP28068 Z82243.1-201ENST00000609432 473 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AC084824.5-201ENST00000612009 413 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AL365204.3-201ENST00000612448 685 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC1.05□□□□□ -2.24
HLA-DMBP28068 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC1.05□□□□□ -2.24
HLA-DMBP28068 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AC092656.1-203ENST00000624134 423 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.05□□□□□ -2.24
HLA-DMBP28068 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.05□□□□□ -2.24
HLA-DMBP28068 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
HLA-DMBP28068 SNORA7.1-201ENST00000363750 139 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 SNORA4.3-201ENST00000365564 137 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 RPS25P9-201ENST00000435591 252 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC092473.1-201ENST00000441098 221 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 SNRPFP4-201ENST00000456366 242 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC112492.4-201ENST00000456549 352 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 AL121594.1-201ENST00000475906 575 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC109445.1-201ENST00000512356 383 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC112198.4-201ENST00000515450 351 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 Y_RNA.676-201ENST00000516393 96 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC009712.1-201ENST00000564938 316 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 MIR1273C-201ENST00000578669 77 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 BNIP3P30-201ENST00000601184 574 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 AL022345.1-201ENST00000607292 135 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 DLEU1_2.1-201ENST00000617920 342 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC093648.1-201ENST00000623546 606 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 AC092125.1-201ENST00000562568 1995 ntBASIC1.04□□□□□ -2.24
HLA-DMBP28068 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.04□□□□□ -2.24
HLA-DMBP28068 AL391987.6-201ENST00000305671 199 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 CBX3P1-201ENST00000325243 554 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 MIR337-201ENST00000362281 93 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 U8.1-201ENST00000362843 134 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 RNU6-942P-201ENST00000363002 107 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.03□□□□□ -2.24
HLA-DMBP28068 RNU6-622P-201ENST00000384272 103 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 BTF3L4P2-201ENST00000392798 346 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC1.03□□□□□ -2.24
HLA-DMBP28068 MIR1305-201ENST00000408300 86 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 RNU2-36P-201ENST00000410361 191 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 RNU6-1025P-201ENST00000410629 104 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 AC016831.2-201ENST00000417179 352 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.03□□□□□ -2.24
HLA-DMBP28068 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.03□□□□□ -2.24
HLA-DMBP28068 Z82205.1-201ENST00000428456 297 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 TRBV26OR9-2-201ENST00000432077 293 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 AP000949.1-201ENST00000438328 629 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 snoU13.14-201ENST00000459372 104 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 MTND1P3-201ENST00000484956 952 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 MTCYBP35-201ENST00000503630 1137 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 AL157871.3-201ENST00000557231 293 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.03□□□□□ -2.24
HLA-DMBP28068 AL359821.1-201ENST00000605519 182 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 AL157834.3-201ENST00000615543 103 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 AL121895.2-201ENST00000619558 447 ntBASIC1.03□□□□□ -2.24
HLA-DMBP28068 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
HLA-DMBP28068 Y_RNA.4-201ENST00000362333 112 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 RNU6-655P-201ENST00000362858 107 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 RNU6-944P-201ENST00000364023 107 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC1.02□□□□□ -2.25
HLA-DMBP28068 RNU6-203P-201ENST00000384038 104 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 RNU6-413P-201ENST00000384115 107 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 CBX3P9-201ENST00000402326 552 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 FCF1P10-201ENST00000407590 479 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AC004965.1-201ENST00000413033 213 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.02□□□□□ -2.25
HLA-DMBP28068 TXNL1P1-201ENST00000429528 554 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC1.02□□□□□ -2.25
HLA-DMBP28068 AL354941.1-201ENST00000438600 464 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AL606517.1-201ENST00000446914 387 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AC007327.1-201ENST00000447461 264 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC1.02□□□□□ -2.25
HLA-DMBP28068 AHI1-208ENST00000488690 712 ntTSL 5 BASIC1.02□□□□□ -2.25
HLA-DMBP28068 AC108078.2-201ENST00000510750 236 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 TRMT112P2-201ENST00000512910 132 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 RNU6-914P-201ENST00000516749 109 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.02□□□□□ -2.25
HLA-DMBP28068 AP003033.1-201ENST00000527244 415 ntBASIC1.02□□□□□ -2.25
HLA-DMBP28068 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms