Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.22□□□□□ -1.73
COL8A1P27658 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.22□□□□□ -1.73
COL8A1P27658 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL8A1P27658 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL8A1P27658 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
COL8A1P27658 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4.21□□□□□ -1.73
COL8A1P27658 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.73
COL8A1P27658 OR56B2P-202ENST00000641377 2453 ntBASIC4.21□□□□□ -1.73
COL8A1P27658 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
COL8A1P27658 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.73
COL8A1P27658 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL8A1P27658 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.21□□□□□ -1.74
COL8A1P27658 Z82209.1-201ENST00000422141 2135 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL8A1P27658 RNU6-793P-201ENST00000384233 104 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 MIR554-201ENST00000384874 96 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 MIR514A1-201ENST00000385133 98 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 SNORA48.4-201ENST00000391089 134 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 RNA5SP397-201ENST00000391323 118 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 RPS26P8-201ENST00000393490 348 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 EDDM3CP-201ENST00000415977 425 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.21□□□□□ -1.74
COL8A1P27658 AC098614.2-201ENST00000426040 255 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 FTH1P6-201ENST00000430768 320 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC4.21□□□□□ -1.74
COL8A1P27658 HSPE1P21-201ENST00000438283 308 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
COL8A1P27658 AC107016.1-201ENST00000550463 337 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.21□□□□□ -1.74
COL8A1P27658 AC022726.1-201ENST00000587475 207 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 AC120024.3-201ENST00000603167 156 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 AC108738.1-201ENST00000603703 237 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 SNX18P1Y-201ENST00000616231 511 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 AP001005.3-201ENST00000622049 129 ntBASIC4.21□□□□□ -1.74
COL8A1P27658 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL8A1P27658 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC4.21□□□□□ -1.74
COL8A1P27658 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL8A1P27658 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL8A1P27658 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL8A1P27658 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL8A1P27658 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.2□□□□□ -1.74
COL8A1P27658 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
COL8A1P27658 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL8A1P27658 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL8A1P27658 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
COL8A1P27658 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
COL8A1P27658 AL450345.1-202ENST00000605741 3881 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.2□□□□□ -1.74
COL8A1P27658 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL8A1P27658 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.2□□□□□ -1.74
COL8A1P27658 U8.1-201ENST00000362843 134 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 SNORA73.1-201ENST00000363107 205 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 RNU6-647P-201ENST00000364243 107 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 RNU6-573P-201ENST00000383938 106 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 RPL21P17-201ENST00000397467 475 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 AL512604.1-201ENST00000404812 257 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 RNU6-710P-201ENST00000410424 105 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 RPS26P42-201ENST00000413485 326 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 AC114755.2-201ENST00000413520 361 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 CYCSP49-201ENST00000420810 319 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL8A1P27658 GPM6BP3-201ENST00000442797 145 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 RN7SL303P-201ENST00000469773 251 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 AC105137.1-201ENST00000484355 562 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.2□□□□□ -1.74
COL8A1P27658 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.2□□□□□ -1.74
COL8A1P27658 RNA5SP290-201ENST00000517133 127 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.2□□□□□ -1.74
COL8A1P27658 AC091178.2-201ENST00000584401 117 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 IPO5P1-202ENST00000600039 287 ntBASIC4.2□□□□□ -1.74
COL8A1P27658 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC4.2□□□□□ -1.74
COL8A1P27658 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL8A1P27658 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC4.2□□□□□ -1.74
COL8A1P27658 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
COL8A1P27658 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL8A1P27658 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
COL8A1P27658 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.19□□□□□ -1.74
COL8A1P27658 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
COL8A1P27658 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL8A1P27658 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.19□□□□□ -1.74
COL8A1P27658 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.19□□□□□ -1.74
COL8A1P27658 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL8A1P27658 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL8A1P27658 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.19□□□□□ -1.74
COL8A1P27658 AL359693.1-201ENST00000614959 2407 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 RNU6-1205P-201ENST00000363625 106 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 Y_RNA.281-201ENST00000364774 94 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 RNY3P5-201ENST00000384127 102 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 RNU1-13P-201ENST00000384499 162 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 MIRLET7F2-201ENST00000385277 83 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 AL357515.1-201ENST00000402967 542 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 U3.37-201ENST00000408528 213 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 RPL7AP49-201ENST00000429522 581 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.19□□□□□ -1.74
COL8A1P27658 AL591438.1-201ENST00000433508 581 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 RPL23AP83-201ENST00000434984 473 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 RPS29P9-201ENST00000440360 171 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 RPS26P45-201ENST00000471748 340 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 AL132838.2-201ENST00000492041 314 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms