Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA3O43365 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXA3O43365 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA3O43365 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA3O43365 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
HOXA3O43365 Y_RNA.14-201ENST00000362415 103 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 RNU6-1280P-201ENST00000365211 107 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 RNU6-1286P-201ENST00000383871 107 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA3O43365 RNU2-38P-201ENST00000410856 79 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 HSPE1P12-201ENST00000412576 301 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 AC009310.1-201ENST00000414414 451 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 RPL21P38-201ENST00000418090 167 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 AC099548.1-201ENST00000421443 426 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA3O43365 AL691449.1-201ENST00000426570 421 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 ARL5AP4-201ENST00000430731 512 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA3O43365 AC009296.1-201ENST00000443146 155 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXA3O43365 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXA3O43365 AC098869.1-201ENST00000481627 292 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 MRPL42P6-201ENST00000486397 371 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 AC097462.2-201ENST00000504623 481 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 AC091874.1-201ENST00000511402 339 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 MTND1P19-201ENST00000511780 315 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 SNORA67.7-201ENST00000516664 135 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 IFITM8P-201ENST00000522529 394 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 AP002770.2-201ENST00000543613 532 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 NACAP3-201ENST00000552100 481 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 AC090617.3-201ENST00000573670 475 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 MIR3158-1-201ENST00000583596 81 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 RPL23AP88-201ENST00000605759 454 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 AC096772.1-201ENST00000609146 564 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 AL138721.1-201ENST00000616756 179 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 SCARNA4-201ENST00000629045 128 ntBASIC3.32□□□□□ -1.88
HOXA3O43365 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXA3O43365 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXA3O43365 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXA3O43365 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA3O43365 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA3O43365 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXA3O43365 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
HOXA3O43365 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA3O43365 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXA3O43365 AC016588.2-201ENST00000632484 3021 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA3O43365 MTND5P6-201ENST00000422338 1798 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 RNU6-858P-201ENST00000362436 107 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 RNA5SP502-201ENST00000362694 119 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 RNA5SP22-201ENST00000365393 109 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
HOXA3O43365 Y_RNA.552-201ENST00000384665 112 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 MIR670-201ENST00000390142 98 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 HSPE1P26-201ENST00000405341 275 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 RNU6ATAC-201ENST00000408749 126 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA3O43365 EIF1AXP1-201ENST00000419267 435 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA3O43365 AC007969.2-201ENST00000441891 191 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 RPL26P9-201ENST00000457466 433 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA3O43365 TRBVB-201ENST00000477100 408 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 AC067942.3-201ENST00000512025 362 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 RNU6-581P-201ENST00000516214 105 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXA3O43365 HIGD1AP1-201ENST00000550979 275 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA3O43365 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA3O43365 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 AC091903.1-201ENST00000624322 454 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 AC048347.1-201ENST00000624621 427 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXA3O43365 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA3O43365 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
HOXA3O43365 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXA3O43365 AC093908.1-201ENST00000623125 8092 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.31□□□□□ -1.88
HOXA3O43365 AP001148.1-201ENST00000624124 2359 ntBASIC3.31□□□□□ -1.88
HOXA3O43365 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA3O43365 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA3O43365 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA3O43365 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXA3O43365 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA3O43365 SNORD32A-201ENST00000364805 84 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA3O43365 Y_RNA.439-201ENST00000384119 94 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 RNU6-17P-201ENST00000384245 107 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 RNY3P4-201ENST00000384428 101 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 RNU6-1026P-201ENST00000384465 108 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 RNU6-18P-201ENST00000384527 107 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 RNU6-1093P-201ENST00000391194 107 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA3O43365 PTMAP2-201ENST00000397627 327 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 RNA5SP39-201ENST00000411245 120 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 BPY2DP-201ENST00000422208 265 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA3O43365 SDAD1P3-201ENST00000427380 333 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 AP000907.1-201ENST00000428428 510 ntBASIC3.3□□□□□ -1.88
HOXA3O43365 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms