Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU1-91P-201ENST00000364746 163 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 Y_RNA.359-201ENST00000365498 102 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 SNORD116-9-201ENST00000384000 95 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 RNU6-116P-201ENST00000384042 109 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 RNU1-138P-201ENST00000384093 164 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 RNU6-72P-201ENST00000384285 79 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 SNORD116-3-201ENST00000384287 95 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 SNORD116-1-201ENST00000384335 95 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 SNORD116-7-201ENST00000384404 95 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 SNORD116-5-201ENST00000384462 95 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 RNU6-456P-201ENST00000384493 107 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 RNU6-1060P-201ENST00000384664 107 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AL133475.1-201ENST00000404414 305 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 RN7SKP223-201ENST00000410582 62 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AL353621.1-201ENST00000418219 243 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AL356320.1-201ENST00000429616 163 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.25□□□□□ -2.05
LHX3Q9UBR4 MTND4P32-201ENST00000437189 1237 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.25□□□□□ -2.05
LHX3Q9UBR4 MTND2P22-201ENST00000444325 1033 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AC012308.1-201ENST00000451232 178 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AC027673.1-201ENST00000456245 405 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AC022364.2-201ENST00000457963 554 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 RPL31P3-201ENST00000458430 332 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 RNU7-182P-201ENST00000459009 62 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AC018437.1-201ENST00000492214 406 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 SNORA25.11-201ENST00000515935 105 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 RNU6-445P-201ENST00000516949 107 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AC079598.5-201ENST00000547460 117 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AP005136.1-201ENST00000579765 429 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 RN7SKP299-201ENST00000606679 301 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AP001486.3-201ENST00000615334 372 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AC009831.4-201ENST00000620744 325 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AC005858.4-201ENST00000623191 700 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AC011155.2-201ENST00000623202 216 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AC090582.1-201ENST00000636321 199 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.25□□□□□ -2.05
LHX3Q9UBR4 AL390237.1-201ENST00000404226 1415 ntBASIC2.25□□□□□ -2.05
LHX3Q9UBR4 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
LHX3Q9UBR4 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.25□□□□□ -2.05
LHX3Q9UBR4 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AL139095.1-201ENST00000404326 391 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 RPS3AP44-201ENST00000425466 790 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 RPL7P12-201ENST00000446719 750 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 HMGB1P30-201ENST00000492455 606 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 ANXA2P1-201ENST00000505539 926 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 SMURF2P1-201ENST00000514992 481 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 SNORD27.1-201ENST00000516319 72 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 SNORA31.15-201ENST00000516771 132 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 RNU6-430P-201ENST00000517078 107 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AP004607.1-201ENST00000524456 203 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AC135279.1-201ENST00000543493 504 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 SNRPGP18-201ENST00000553000 214 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AC026464.5-201ENST00000562497 722 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AC068790.2-201ENST00000602601 557 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AC096772.1-201ENST00000609146 564 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AC099842.1-201ENST00000619919 596 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 SEPT14P19-203ENST00000633205 211 ntBASIC2.24□□□□□ -2.05
LHX3Q9UBR4 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.24□□□□□ -2.05
LHX3Q9UBR4 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
LHX3Q9UBR4 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
LHX3Q9UBR4 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
LHX3Q9UBR4 AL135786.1-201ENST00000415892 214 ntBASIC2.23□□□□□ -2.05
LHX3Q9UBR4 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.23□□□□□ -2.05
LHX3Q9UBR4 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.23□□□□□ -2.05
LHX3Q9UBR4 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
LHX3Q9UBR4 AL162395.1-201ENST00000457882 422 ntBASIC2.23□□□□□ -2.05
LHX3Q9UBR4 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.23□□□□□ -2.05
LHX3Q9UBR4 MED28P2-201ENST00000475771 317 ntBASIC2.23□□□□□ -2.05
LHX3Q9UBR4 MIR892C-201ENST00000516410 77 ntBASIC2.23□□□□□ -2.05
LHX3Q9UBR4 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.23□□□□□ -2.05
LHX3Q9UBR4 OR4R1P-201ENST00000529879 463 ntBASIC2.23□□□□□ -2.05
LHX3Q9UBR4 AP000889.2-201ENST00000532684 490 ntBASIC2.23□□□□□ -2.05
LHX3Q9UBR4 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.23□□□□□ -2.05
LHX3Q9UBR4 MIR1273D-201ENST00000577266 86 ntBASIC2.23□□□□□ -2.05
LHX3Q9UBR4 MIR4775-201ENST00000581168 75 ntBASIC2.23□□□□□ -2.05
LHX3Q9UBR4 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.23□□□□□ -2.05
LHX3Q9UBR4 AC013412.1-201ENST00000610687 192 ntBASIC2.23□□□□□ -2.05
LHX3Q9UBR4 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms