Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 U8.2-201ENST00000363156 134 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 RNU6-371P-201ENST00000364283 108 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 Y_RNA.367-201ENST00000365544 101 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 RNU6-74P-201ENST00000384235 107 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 RNU6-301P-201ENST00000384277 107 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 MIR1-2-201ENST00000384961 85 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AL133475.1-201ENST00000404414 305 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 RNU2-2P-201ENST00000410396 191 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AC027124.2-201ENST00000428249 105 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 RPL30P4-201ENST00000429309 333 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 RPS15AP9-201ENST00000439856 381 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 KATNBL1P3-201ENST00000443475 909 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AC079448.1-201ENST00000449377 373 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AC003071.1-201ENST00000451219 789 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AL021397.1-201ENST00000451806 248 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 RNU6-956P-201ENST00000458868 103 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AC104806.1-201ENST00000508720 308 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 SNORA25.11-201ENST00000515935 105 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 RNU1-41P-201ENST00000516161 162 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 RNU1-48P-201ENST00000516400 162 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 RNU6-410P-201ENST00000517006 107 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AC012213.3-201ENST00000577199 777 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AC006566.1-201ENST00000608943 513 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 U2.15-201ENST00000611544 191 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AC005332.10-201ENST00000612725 619 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 U2.16-201ENST00000613119 191 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 U2.12-201ENST00000613778 191 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 U2.20-201ENST00000613956 192 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AC245884.12-201ENST00000615364 59 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 U2.9-201ENST00000615427 191 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 U2.11-201ENST00000616345 191 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 U2.2-201ENST00000616535 191 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 U2.3-201ENST00000617785 191 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AL449363.1-201ENST00000617815 186 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 U2.19-201ENST00000618602 191 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 RNU2-1-201ENST00000618664 191 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 U2.6-201ENST00000619225 191 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 U2.5-201ENST00000619465 191 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 U2.10-201ENST00000620268 191 ntBASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS54Q9P1Q0 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 RNU6-181P-201ENST00000363225 107 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 SNORA62.1-201ENST00000364287 154 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 RNU6-1179P-201ENST00000384667 107 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 Y_RNA.623-201ENST00000411128 95 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 USP9YP27-201ENST00000418455 438 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 PIGFP2-201ENST00000421400 651 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 AL365338.1-201ENST00000422282 858 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 BX276092.3-201ENST00000424182 230 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 AL358934.1-201ENST00000432346 324 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 MTCO1P19-201ENST00000443487 500 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 AC079781.2-201ENST00000446424 169 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 AL441985.1-201ENST00000457727 251 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 RPS29P21-201ENST00000496272 170 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 ARL2BPP4-201ENST00000506854 471 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 RNU6-445P-201ENST00000516949 107 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 RNU6-685P-201ENST00000517088 95 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 RANP3-201ENST00000530970 276 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 MIR5571-201ENST00000577998 113 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 MIR548AC-201ENST00000585049 88 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 AC013412.1-201ENST00000610687 192 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 AC010678.1-201ENST00000614118 713 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 U6.42-201ENST00000618440 107 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 AC138649.3-201ENST00000622154 254 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 MIR219B-201ENST00000637023 88 ntBASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.35□□□□□ -2.03
VPS54Q9P1Q0 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 MIR412-201ENST00000362142 91 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 RNU6-116P-201ENST00000384042 109 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 SNORA75-201ENST00000384158 137 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 RNU6-456P-201ENST00000384493 107 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 Y_RNA.553-201ENST00000384670 102 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 CIR1P3-201ENST00000405137 479 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 FTH1P15-201ENST00000406984 280 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 RNA5SP338-201ENST00000410495 85 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 EEF1A1P40-201ENST00000412883 573 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 RPL21P90-201ENST00000415692 466 ntBASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS54Q9P1Q0 AC000111.3-201ENST00000433478 193 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms