Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RNU6-612P-201ENST00000516909 102 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AC144568.1-201ENST00000520139 137 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 CYCSP30-201ENST00000546447 172 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 CYCSP39-201ENST00000565821 309 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 KLKP1-201ENST00000595979 403 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AL606490.9-201ENST00000603331 271 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 7SK.7-201ENST00000603504 247 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AC007485.1-201ENST00000616755 206 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AL162373.1-201ENST00000620433 407 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 7SK.10-201ENST00000621414 298 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AL606534.2-204ENST00000635008 178 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 RNU6-227P-201ENST00000362865 103 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 RNA5SP479-201ENST00000364858 117 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 Y_RNA.455-201ENST00000384230 98 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 MIR521-1-201ENST00000384902 87 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 MIR1302-3-201ENST00000408128 138 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 AC113618.1-201ENST00000416747 285 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 YPEL5P1-201ENST00000419731 367 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 NUP35P1-201ENST00000422734 947 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 GSTA11P-201ENST00000452866 669 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 RPL12P25-201ENST00000455592 494 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 RN7SL323P-201ENST00000494712 295 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 AC093852.1-201ENST00000503587 266 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 AC021146.2-201ENST00000504736 556 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 SNORA40.14-201ENST00000516543 86 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 AC091144.1-201ENST00000519573 138 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 AC022616.4-201ENST00000522985 181 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 HIGD1AP1-201ENST00000550979 275 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 DNAJC8P1-201ENST00000554535 372 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 AL356157.2-201ENST00000605122 111 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 PRR13P7-201ENST00000605538 430 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 MIR3976-201ENST00000606807 139 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 ZYXP1-201ENST00000617638 118 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 AC119674.1-207ENST00000641355 633 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 MTND4P1-201ENST00000457501 1466 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 MTND5P9-201ENST00000503854 1755 ntBASIC3.32□□□□□ -1.88
VSX1Q9NZR4 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VSX1Q9NZR4 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AL021368.2-201ENST00000606125 5352 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 MAPK10-362ENST00000641864 4484 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 Y_RNA.149-201ENST00000363558 117 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 Y_RNA.152-201ENST00000363578 100 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 Y_RNA.496-201ENST00000384444 101 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 RNU6-700P-201ENST00000391043 107 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 RNU6-1156P-201ENST00000410365 100 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AC007098.1-201ENST00000420122 367 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 TRIAP1P1-201ENST00000427062 225 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AC006946.1-201ENST00000429106 328 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AC007389.2-201ENST00000434630 306 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 NDUFB1P1-201ENST00000435191 180 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 U3.44-201ENST00000458938 192 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 RPL32P34-201ENST00000486380 400 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AC103996.1-201ENST00000555468 102 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AC007224.1-201ENST00000564410 144 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 MIR3609-201ENST00000582661 80 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 AL132822.1-201ENST00000617063 513 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 MIR6875-201ENST00000617506 72 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 MIR6076-201ENST00000617521 113 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 MIR6134-201ENST00000617606 109 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 MIR7153-201ENST00000637758 57 ntBASIC3.31□□□□□ -1.88
VSX1Q9NZR4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
VSX1Q9NZR4 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms