Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 ATP6V0E1P3-201ENST00000420036 246 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.92□□□□□ -2.26
SCN3AQ9NY46 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AL078601.1-201ENST00000444542 271 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 MOB1AP2-201ENST00000446060 614 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 RPS3AP22-201ENST00000488297 769 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AC112198.4-201ENST00000515450 351 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 ACA59.2-201ENST00000517061 156 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AP003049.1-201ENST00000529418 457 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 LRRC6P1-201ENST00000532188 885 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AL133153.1-201ENST00000557756 303 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AC010900.2-201ENST00000604508 210 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AC098614.4-201ENST00000607601 462 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AF129408.1-201ENST00000608767 431 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AC009541.1-201ENST00000438279 2662 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 RNU6-97P-201ENST00000363387 104 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 RNU6-1284P-201ENST00000363701 100 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 RNU6-1210P-201ENST00000363775 107 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 RNU6-289P-201ENST00000364093 107 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AL022400.1-201ENST00000423946 935 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 GTF2IP3-201ENST00000433887 494 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 CALM1P1-201ENST00000442082 433 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 BTF3P15-201ENST00000455606 336 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC010409.1-201ENST00000487382 476 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 RNU6-678P-201ENST00000516832 109 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 RNU6-1028P-201ENST00000517164 93 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 RN7SKP256-201ENST00000517201 314 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 FAM106DP-201ENST00000586416 501 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 MIR8074-201ENST00000615081 81 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 HSPE1P21-201ENST00000438283 308 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 RPL37P6-201ENST00000460682 294 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AP001025.1-201ENST00000486139 332 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC079395.1-201ENST00000510981 262 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC009902.1-201ENST00000519351 183 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC021451.1-201ENST00000523498 1129 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC060771.1-201ENST00000582031 164 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC005776.1-201ENST00000603164 290 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 MTATP6P2-201ENST00000603319 678 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC078880.5-201ENST00000617845 421 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AP000943.4-201ENST00000622912 357 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC091895.1-201ENST00000624494 256 ntBASIC0.91□□□□□ -2.26
SCN3AQ9NY46 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC0.91□□□□□ -2.26
SCN3AQ9NY46 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
SCN3AQ9NY46 MIR373-201ENST00000362273 69 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 SNORA25.8-201ENST00000364831 128 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.9□□□□□ -2.27
SCN3AQ9NY46 RNU6-166P-201ENST00000384371 107 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 RNU6-160P-201ENST00000384591 107 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC0.9□□□□□ -2.27
SCN3AQ9NY46 MRPS36P1-201ENST00000421291 307 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC0.9□□□□□ -2.27
SCN3AQ9NY46 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.9□□□□□ -2.27
SCN3AQ9NY46 AC015922.2-201ENST00000435593 184 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 AC244505.5-201ENST00000443639 207 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC0.9□□□□□ -2.27
SCN3AQ9NY46 PAXBP1P1-201ENST00000449315 447 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC0.9□□□□□ -2.27
SCN3AQ9NY46 FABP5P15-201ENST00000453566 214 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.9□□□□□ -2.27
SCN3AQ9NY46 PRELID3BP1-201ENST00000457142 540 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 OR2A41P-201ENST00000473586 105 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC0.9□□□□□ -2.27
SCN3AQ9NY46 RNU6-113P-201ENST00000516653 101 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 AC026616.1-201ENST00000523157 525 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 OR8K2P-201ENST00000524645 927 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC0.9□□□□□ -2.27
SCN3AQ9NY46 AL160236.1-201ENST00000556317 195 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 AL355598.1-201ENST00000604169 202 ntBASIC0.9□□□□□ -2.27
SCN3AQ9NY46 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
SCN3AQ9NY46 Y_RNA.255-201ENST00000364581 97 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 RNU6-658P-201ENST00000384606 106 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 RNU11-5P-201ENST00000391216 129 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AL590084.1-201ENST00000407885 387 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 MIR1262-201ENST00000408276 93 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 RNU2-23P-201ENST00000410545 195 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 EIF4EP2-201ENST00000422816 654 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 UBE2D3P3-201ENST00000426992 425 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms