Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AL513043.1-201ENST00000439124 535 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.32□□□□□ -2.04
LIME1Q9H400 RPS15AP27-201ENST00000449183 343 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.32□□□□□ -2.04
LIME1Q9H400 SRRM1P2-201ENST00000464531 1192 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.32□□□□□ -2.04
LIME1Q9H400 RPS29P21-201ENST00000496272 170 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.32□□□□□ -2.04
LIME1Q9H400 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.32□□□□□ -2.04
LIME1Q9H400 AC104136.1-201ENST00000512969 394 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 LRRC34P2-201ENST00000514850 553 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 RNU1-86P-201ENST00000516108 154 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 RNU1-107P-201ENST00000516617 154 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AL137161.1-201ENST00000532231 390 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AP002770.2-201ENST00000543613 532 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.32□□□□□ -2.04
LIME1Q9H400 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.32□□□□□ -2.04
LIME1Q9H400 ZNF519P2-201ENST00000557032 169 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.32□□□□□ -2.04
LIME1Q9H400 MIR5692A1-201ENST00000580523 69 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.32□□□□□ -2.04
LIME1Q9H400 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.32□□□□□ -2.04
LIME1Q9H400 AF250324.2-201ENST00000608299 610 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 U4.5-201ENST00000617137 123 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AC022418.1-201ENST00000624118 445 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AC093536.2-201ENST00000565257 1406 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AC010889.1-201ENST00000566193 2666 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
LIME1Q9H400 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LIME1Q9H400 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
LIME1Q9H400 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
LIME1Q9H400 Y_RNA.399-201ENST00000383955 105 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 RNU6-1179P-201ENST00000384667 107 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 SNORA16.2-201ENST00000390991 127 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 RNA5SP354-201ENST00000391247 136 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 SNORA26.7-201ENST00000391288 122 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 AL513475.1-201ENST00000406602 315 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 BTF3P7-201ENST00000407097 488 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 RNU6-193P-201ENST00000410977 107 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 CYCSP33-201ENST00000414485 327 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 RPL21P90-201ENST00000415692 466 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.31□□□□□ -2.04
LIME1Q9H400 AL358075.3-201ENST00000426289 226 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.31□□□□□ -2.04
LIME1Q9H400 RPL21P2-201ENST00000440049 481 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.31□□□□□ -2.04
LIME1Q9H400 RPS27AP9-201ENST00000477681 438 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.31□□□□□ -2.04
LIME1Q9H400 HMGB1P30-201ENST00000492455 606 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.31□□□□□ -2.04
LIME1Q9H400 AC109329.2-201ENST00000519658 482 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.31□□□□□ -2.04
LIME1Q9H400 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.31□□□□□ -2.04
LIME1Q9H400 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
LIME1Q9H400 AL157687.1-201ENST00000554853 619 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.31□□□□□ -2.04
LIME1Q9H400 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.31□□□□□ -2.04
LIME1Q9H400 AC005498.1-201ENST00000592125 465 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 AC010620.2-201ENST00000600135 313 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 AC091152.3-201ENST00000604227 325 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 AC087045.1-201ENST00000605856 382 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.31□□□□□ -2.04
LIME1Q9H400 AC084782.3-201ENST00000612282 578 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 AL354950.2-201ENST00000617939 290 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 UCA1.1-201ENST00000620952 75 ntBASIC2.31□□□□□ -2.04
LIME1Q9H400 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LIME1Q9H400 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
LIME1Q9H400 ADAM3A-203ENST00000461344 2157 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 Y_RNA.372-201ENST00000365599 102 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 RNU6-192P-201ENST00000391253 100 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 RPL21P75-201ENST00000396599 483 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 RPL21P28-201ENST00000401418 483 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AL356057.2-201ENST00000403318 432 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AL592114.1-201ENST00000403842 483 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.3□□□□□ -2.04
LIME1Q9H400 RNU6-908P-201ENST00000410160 94 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.3□□□□□ -2.04
LIME1Q9H400 AL161651.1-201ENST00000440882 223 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.3□□□□□ -2.04
LIME1Q9H400 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
LIME1Q9H400 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.3□□□□□ -2.04
LIME1Q9H400 SNRPFP3-201ENST00000457792 225 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 RPL21P39-201ENST00000463605 483 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 RPL31P41-201ENST00000477967 372 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 RPL21P93-201ENST00000480465 489 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AC087190.1-201ENST00000484462 480 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AC093591.1-201ENST00000491435 481 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 RPL21P16-201ENST00000495531 483 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.3□□□□□ -2.04
LIME1Q9H400 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.3□□□□□ -2.04
LIME1Q9H400 SEM1P1-201ENST00000506694 209 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 CCDC34P1-201ENST00000507441 517 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 MRPS36P2-201ENST00000512569 299 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 RNU2-69P-201ENST00000516061 100 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 MIR892C-201ENST00000516410 77 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.3□□□□□ -2.04
LIME1Q9H400 AL512360.1-201ENST00000555346 234 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 LINC00933-203ENST00000559812 219 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms