Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AL133216.2-202ENST00000634512 349 ntBASIC3.21□□□□□ -1.9
PAAF1Q9BRP4 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PAAF1Q9BRP4 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.21□□□□□ -1.9
PAAF1Q9BRP4 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 RNU6-797P-201ENST00000363101 109 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 SNORA5B-201ENST00000363786 132 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 SNORA18.3-201ENST00000384122 132 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 SNORA11.2-201ENST00000408318 127 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 AC093151.1-201ENST00000427711 313 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 MTND3P23-201ENST00000431980 347 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 AC236972.1-201ENST00000433225 199 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 SETP5-201ENST00000437270 562 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 AL359672.1-201ENST00000442302 409 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 RNU7-170P-201ENST00000459303 61 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 UBE2DNL-203ENST00000474922 222 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 RPS27AP10-201ENST00000496103 208 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 AC091826.1-201ENST00000514065 313 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 RNU6-566P-201ENST00000516790 107 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 AC026371.1-201ENST00000551867 419 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 MIR4790-201ENST00000577799 79 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 AC138761.3-201ENST00000579993 334 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 AC008121.1-201ENST00000603244 268 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 AC087045.1-201ENST00000605856 382 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 AC004852.3-201ENST00000614131 326 ntBASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
PAAF1Q9BRP4 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 RNU1-75P-201ENST00000347264 129 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 RNU6-562P-201ENST00000362731 107 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 Y_RNA.184-201ENST00000363884 108 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 Y_RNA.301-201ENST00000364990 103 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 Y_RNA.529-201ENST00000384586 119 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 MIR591-201ENST00000385290 95 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 RNU2-41P-201ENST00000410991 178 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 AL031274.1-201ENST00000450334 232 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 AL136097.1-201ENST00000456945 913 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 AP002884.2-201ENST00000471647 395 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 AC026801.1-201ENST00000497178 464 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 Y_RNA.687-201ENST00000516558 91 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 RNU6-1088P-201ENST00000516850 104 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 AL163153.1-201ENST00000554223 283 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 XIST_intron.1-201ENST00000619444 68 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 MIR3199-2-201ENST00000636243 86 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 MTND4P29-201ENST00000503122 1372 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 AC233263.6-201ENST00000631132 1963 ntBASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
PAAF1Q9BRP4 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 SNORD116-11-201ENST00000383882 92 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 AC016831.2-201ENST00000417179 352 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 ARF4P2-201ENST00000430209 526 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 SNAP23P1-201ENST00000433229 246 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 AC107399.1-201ENST00000451226 265 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 AC233279.1-201ENST00000455300 423 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 MTCO1P29-201ENST00000496868 288 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 AC008526.1-201ENST00000509149 338 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 AC113155.1-201ENST00000511141 769 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 RPL23AP94-201ENST00000512518 302 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 RNA5SP217-201ENST00000515959 91 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 Y_RNA.675-201ENST00000516389 149 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 AC105029.1-201ENST00000520250 669 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 RAB11AP2-201ENST00000545905 639 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 RPS3AP23-202ENST00000574601 686 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 AC023043.2-201ENST00000589678 1026 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 FAM157A-202ENST00000615155 405 ntBASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
PAAF1Q9BRP4 AC110491.1-201ENST00000562191 2010 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 SNORD56.3-201ENST00000363507 71 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 Y_RNA.212-201ENST00000364177 102 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 RNU6-1280P-201ENST00000365211 107 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 RNU5E-7P-201ENST00000365290 117 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 SNORD73A-201ENST00000386062 65 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 AL445529.1-201ENST00000398713 389 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 U3.37-201ENST00000408528 213 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 125.8 ms