Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CYCSP27-201ENST00000527643 293 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AC026371.1-201ENST00000551867 419 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 SUB1P3-201ENST00000564581 315 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AC125232.2-201ENST00000592457 143 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AC006133.1-201ENST00000617106 264 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 U6.99-201ENST00000637524 83 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 AC010680.1-201ENST00000590024 3590 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.2-201ENST00000362330 96 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.222-201ENST00000364264 102 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 RNU6-658P-201ENST00000384606 106 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 MIR30B-201ENST00000384850 88 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 MIR200C-201ENST00000384980 68 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 RPS4XP7-201ENST00000406274 780 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 SNORA57.3-201ENST00000411095 141 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 AC092798.1-201ENST00000458542 409 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 RPL21P11-201ENST00000461458 483 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 RN7SL271P-201ENST00000487601 295 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 MTND3P25-201ENST00000509243 135 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 AC092436.3-201ENST00000511788 257 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 CYCSP30-201ENST00000546447 172 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 MIR4429-201ENST00000580105 73 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 Z98751.3-201ENST00000604447 521 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 AL591424.2-201ENST00000617023 128 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CLIP3Q96DZ5 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.39-201ENST00000362620 98 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 RNA5SP399-201ENST00000364003 117 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.288-201ENST00000364854 92 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.350-201ENST00000365409 98 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 RNU6-1062P-201ENST00000383908 107 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.480-201ENST00000384364 102 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 RNU6-166P-201ENST00000384371 107 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.623-201ENST00000411128 95 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 RNU6-607P-201ENST00000411283 108 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AC096664.2-201ENST00000411843 406 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 PGBD4P6-201ENST00000421501 610 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AL445584.1-201ENST00000431451 330 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AC099799.1-201ENST00000439809 192 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AL714022.1-201ENST00000439897 151 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AC011816.1-201ENST00000441346 546 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 FTH1P25-201ENST00000447665 469 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 SNORD127-201ENST00000458892 86 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 RNU6-1132P-201ENST00000459214 107 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AC008571.1-201ENST00000467232 300 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AC026784.1-201ENST00000507986 352 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 SNORA67.7-201ENST00000516664 135 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 SNORD59.2-201ENST00000516873 68 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AC025423.5-201ENST00000550230 219 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AC007375.1-201ENST00000554513 578 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 MIR4782-201ENST00000577987 79 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 LRRC37A5P-203ENST00000580181 585 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 MIR3158-1-201ENST00000583596 81 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 MTND4LP5-201ENST00000605152 292 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 RMST_4.1-201ENST00000616886 107 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AC141273.2-201ENST00000618989 130 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 FP236240.3-201ENST00000623061 327 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 CR392039.5-201ENST00000623201 510 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 MIR4272-201ENST00000635924 64 ntBASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CLIP3Q96DZ5 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 RN7SKP156-201ENST00000410308 342 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 173.1 ms