Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 RN7SKP298-201ENST00000515950 94 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 RNA5SP24-201ENST00000516478 95 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 AC092325.1-201ENST00000566449 554 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 AC025678.1-201ENST00000567861 338 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 MIR3611-201ENST00000584484 83 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 AL138889.2-201ENST00000603883 242 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
SKA3Q8IX90 AP001486.3-201ENST00000615334 372 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 AC011155.2-201ENST00000623202 216 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.05□□□□□ -2.08
SKA3Q8IX90 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.05□□□□□ -2.08
SKA3Q8IX90 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SKA3Q8IX90 MIR449A-201ENST00000362113 91 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 RNU6-1029P-201ENST00000384109 107 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SKA3Q8IX90 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.04□□□□□ -2.08
SKA3Q8IX90 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.04□□□□□ -2.08
SKA3Q8IX90 HMGN2P38-201ENST00000423806 265 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.04□□□□□ -2.08
SKA3Q8IX90 FABP5P14-201ENST00000437273 393 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.04□□□□□ -2.08
SKA3Q8IX90 AC004383.1-201ENST00000438135 289 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 AL139109.1-201ENST00000455491 297 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 MTND4P1-201ENST00000457501 1466 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 UBE2DNL-203ENST00000474922 222 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 AC023141.11-201ENST00000508864 202 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 AC079140.3-201ENST00000511111 550 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.04□□□□□ -2.08
SKA3Q8IX90 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.04□□□□□ -2.08
SKA3Q8IX90 MIR3616-201ENST00000584070 92 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 MIR4765-201ENST00000585007 77 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.04□□□□□ -2.08
SKA3Q8IX90 uc_338.14-201ENST00000613162 166 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 U6.42-201ENST00000618440 107 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 AC010329.5-201ENST00000623497 2174 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 AC009161.2-201ENST00000624626 138 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.04□□□□□ -2.08
SKA3Q8IX90 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.04□□□□□ -2.08
SKA3Q8IX90 SEPT14P19-203ENST00000633205 211 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 IGHVIII-44-202ENST00000636235 289 ntBASIC2.04□□□□□ -2.08
SKA3Q8IX90 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.03□□□□□ -2.08
SKA3Q8IX90 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
SKA3Q8IX90 AL359854.1-201ENST00000614203 1594 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
SKA3Q8IX90 RNU4-82P-201ENST00000362443 140 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 Y_RNA.51-201ENST00000362725 102 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 RNU4-48P-201ENST00000365559 182 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 RNU6-72P-201ENST00000384285 79 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 RNU6-1119P-201ENST00000384349 108 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 MIR218-1-201ENST00000384999 110 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 DEFB108C-201ENST00000400154 252 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 CIR1P3-201ENST00000405137 479 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 FTH1P15-201ENST00000406984 280 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.03□□□□□ -2.08
SKA3Q8IX90 RPL21P90-201ENST00000415692 466 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.03□□□□□ -2.08
SKA3Q8IX90 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.03□□□□□ -2.08
SKA3Q8IX90 AC236972.1-201ENST00000433225 199 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.03□□□□□ -2.08
SKA3Q8IX90 RPS15AP28-201ENST00000435088 386 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.03□□□□□ -2.08
SKA3Q8IX90 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.03□□□□□ -2.08
SKA3Q8IX90 NDUFB1P2-201ENST00000449477 176 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.03□□□□□ -2.08
SKA3Q8IX90 AL441985.1-201ENST00000457727 251 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 TPT1P7-201ENST00000458300 517 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.03□□□□□ -2.08
SKA3Q8IX90 AC011005.2-201ENST00000487324 359 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.03□□□□□ -2.08
SKA3Q8IX90 SCARNA3-201ENST00000517097 143 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.03□□□□□ -2.08
SKA3Q8IX90 AC023824.2-201ENST00000566185 400 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 AC105137.2-201ENST00000569073 466 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 MIR5692A1-201ENST00000580523 69 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 MIR4775-201ENST00000581168 75 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 AC087045.1-201ENST00000605856 382 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
SKA3Q8IX90 AC010378.1-201ENST00000619270 362 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.03□□□□□ -2.08
SKA3Q8IX90 MIR7157-201ENST00000635801 60 ntBASIC2.03□□□□□ -2.08
SKA3Q8IX90 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
SKA3Q8IX90 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
SKA3Q8IX90 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.03□□□□□ -2.08
SKA3Q8IX90 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.03□□□□□ -2.08
SKA3Q8IX90 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SKA3Q8IX90 AL109809.4-201ENST00000603520 2185 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SKA3Q8IX90 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 RNU6-858P-201ENST00000362436 107 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 232.4 ms